Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC11.3□□□□□ -0.6
PRKDCP78527 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
PRKDCP78527 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
PRKDCP78527 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC11.29□□□□□ -0.6
PRKDCP78527 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 RBM8B-201ENST00000555532 525 ntBASIC11.29□□□□□ -0.6
PRKDCP78527 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC11.29□□□□□ -0.6
PRKDCP78527 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.29□□□□□ -0.6
PRKDCP78527 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC11.29□□□□□ -0.6
PRKDCP78527 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC11.29□□□□□ -0.6
PRKDCP78527 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
PRKDCP78527 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 RCC2P8-201ENST00000502779 1035 ntBASIC11.29□□□□□ -0.6
PRKDCP78527 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC11.29□□□□□ -0.6
PRKDCP78527 NAT9-211ENST00000580632 799 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 AC025262.2-201ENST00000623975 1056 ntBASIC11.29□□□□□ -0.6
PRKDCP78527 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC11.29□□□□□ -0.6
PRKDCP78527 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 LETM1P2-201ENST00000597330 2178 ntBASIC11.29□□□□□ -0.6
PRKDCP78527 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC11.29□□□□□ -0.6
PRKDCP78527 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC11.29□□□□□ -0.6
PRKDCP78527 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
PRKDCP78527 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
PRKDCP78527 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC11.29□□□□□ -0.6
PRKDCP78527 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC11.29□□□□□ -0.6
PRKDCP78527 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
PRKDCP78527 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
PRKDCP78527 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
PRKDCP78527 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 EID1-202ENST00000560490 584 ntTSL 3 BASIC11.28□□□□□ -0.6
PRKDCP78527 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
PRKDCP78527 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
PRKDCP78527 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 AL391256.1-201ENST00000443260 1855 ntBASIC11.28□□□□□ -0.6
PRKDCP78527 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC11.28□□□□□ -0.6
PRKDCP78527 RN7SL396P-201ENST00000471086 295 ntBASIC11.28□□□□□ -0.6
PRKDCP78527 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC11.28□□□□□ -0.6
PRKDCP78527 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC11.28□□□□□ -0.6
PRKDCP78527 MIR4683-201ENST00000579659 81 ntBASIC11.28□□□□□ -0.6
PRKDCP78527 PTPN20CP-201ENST00000614090 920 ntBASIC11.28□□□□□ -0.6
PRKDCP78527 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
PRKDCP78527 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC11.28□□□□□ -0.6
PRKDCP78527 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC11.28□□□□□ -0.6
PRKDCP78527 AC005632.3-201ENST00000605544 308 ntBASIC11.28□□□□□ -0.6
PRKDCP78527 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
PRKDCP78527 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
PRKDCP78527 AC005622.1-201ENST00000636801 1703 ntBASIC11.28□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms