Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
COL4A4P53420 PCDHB19P-201ENST00000570871 2371 ntBASIC16.89■□□□□ 0.29
COL4A4P53420 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 AC106820.2-201ENST00000563775 3264 ntBASIC16.89■□□□□ 0.29
COL4A4P53420 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COL4A4P53420 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
COL4A4P53420 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL4A4P53420 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
COL4A4P53420 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
COL4A4P53420 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.88■□□□□ 0.29
COL4A4P53420 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
COL4A4P53420 Z93015.1-201ENST00000451718 390 ntBASIC16.88■□□□□ 0.29
COL4A4P53420 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.88■□□□□ 0.29
COL4A4P53420 SLED1-202ENST00000512051 380 ntBASIC16.88■□□□□ 0.29
COL4A4P53420 FOS-206ENST00000555347 1280 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 AC016629.1-201ENST00000596579 586 ntBASIC16.88■□□□□ 0.29
COL4A4P53420 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.88■□□□□ 0.29
COL4A4P53420 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.88■□□□□ 0.29
COL4A4P53420 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.88■□□□□ 0.29
COL4A4P53420 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL4A4P53420 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COL4A4P53420 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.88■□□□□ 0.29
COL4A4P53420 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 EIF4HP1-201ENST00000453115 687 ntBASIC16.88■□□□□ 0.29
COL4A4P53420 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.88■□□□□ 0.29
COL4A4P53420 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL4A4P53420 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
COL4A4P53420 AC008687.7-202ENST00000637404 953 ntBASIC16.88■□□□□ 0.29
COL4A4P53420 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
COL4A4P53420 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
COL4A4P53420 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 AC099398.1-201ENST00000567919 2776 ntBASIC16.87■□□□□ 0.29
COL4A4P53420 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.87■□□□□ 0.29
COL4A4P53420 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC16.87■□□□□ 0.29
COL4A4P53420 HIST2H2BC-201ENST00000498492 580 ntBASIC16.87■□□□□ 0.29
COL4A4P53420 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.87■□□□□ 0.29
COL4A4P53420 CHMP4BP1-201ENST00000556017 588 ntBASIC16.87■□□□□ 0.29
COL4A4P53420 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.87■□□□□ 0.29
COL4A4P53420 AL022328.3-201ENST00000607943 679 ntBASIC16.87■□□□□ 0.29
COL4A4P53420 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.87■□□□□ 0.29
COL4A4P53420 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.87■□□□□ 0.29
COL4A4P53420 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.87■□□□□ 0.29
COL4A4P53420 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.87■□□□□ 0.29
COL4A4P53420 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL4A4P53420 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.86■□□□□ 0.29
COL4A4P53420 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL4A4P53420 AC084018.2-201ENST00000613093 2607 ntBASIC16.86■□□□□ 0.29
COL4A4P53420 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL4A4P53420 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.86■□□□□ 0.29
COL4A4P53420 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL4A4P53420 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.86■□□□□ 0.29
COL4A4P53420 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.86■□□□□ 0.29
COL4A4P53420 AC093433.1-201ENST00000458048 571 ntBASIC16.86■□□□□ 0.29
COL4A4P53420 AC079328.1-201ENST00000560358 952 ntBASIC16.86■□□□□ 0.29
COL4A4P53420 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.86■□□□□ 0.29
COL4A4P53420 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.86■□□□□ 0.29
COL4A4P53420 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.86■□□□□ 0.29
COL4A4P53420 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms