Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.63■□□□□ 0.25
NEK3P51956 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
NEK3P51956 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.63■□□□□ 0.25
NEK3P51956 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.63■□□□□ 0.25
NEK3P51956 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.63■□□□□ 0.25
NEK3P51956 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.63■□□□□ 0.25
NEK3P51956 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.63■□□□□ 0.25
NEK3P51956 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.63■□□□□ 0.25
NEK3P51956 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
NEK3P51956 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.63■□□□□ 0.25
NEK3P51956 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.63■□□□□ 0.25
NEK3P51956 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.63■□□□□ 0.25
NEK3P51956 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
NEK3P51956 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
NEK3P51956 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.62■□□□□ 0.25
NEK3P51956 SPDYE14P-201ENST00000442619 822 ntBASIC16.62■□□□□ 0.25
NEK3P51956 PRYP6-201ENST00000514804 343 ntBASIC16.62■□□□□ 0.25
NEK3P51956 AC026150.2-201ENST00000564693 1156 ntBASIC16.62■□□□□ 0.25
NEK3P51956 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.62■□□□□ 0.25
NEK3P51956 AC073389.1-201ENST00000595595 795 ntBASIC16.62■□□□□ 0.25
NEK3P51956 AC093512.1-201ENST00000617969 520 ntBASIC16.62■□□□□ 0.25
NEK3P51956 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.62■□□□□ 0.25
NEK3P51956 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.62■□□□□ 0.25
NEK3P51956 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
NEK3P51956 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
NEK3P51956 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 AC112504.1-201ENST00000623415 1841 ntBASIC16.61■□□□□ 0.25
NEK3P51956 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.61■□□□□ 0.25
NEK3P51956 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 REXO1L8P-201ENST00000604378 1897 ntBASIC16.61■□□□□ 0.25
NEK3P51956 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.61■□□□□ 0.25
NEK3P51956 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
NEK3P51956 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.61■□□□□ 0.25
NEK3P51956 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.61■□□□□ 0.25
NEK3P51956 SPDYE7P-202ENST00000420373 878 ntBASIC16.61■□□□□ 0.25
NEK3P51956 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.61■□□□□ 0.25
NEK3P51956 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.61■□□□□ 0.25
NEK3P51956 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.61■□□□□ 0.25
NEK3P51956 ALG1L8P-201ENST00000533887 760 ntBASIC16.61■□□□□ 0.25
NEK3P51956 AC069262.1-201ENST00000539058 672 ntBASIC16.61■□□□□ 0.25
NEK3P51956 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.61■□□□□ 0.25
NEK3P51956 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.61■□□□□ 0.25
NEK3P51956 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
NEK3P51956 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.61■□□□□ 0.25
NEK3P51956 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.61■□□□□ 0.25
NEK3P51956 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms