Protein–RNA interactions for Protein: P49454

CENPF, Centromere protein F, humanhuman

Predictions only

Length 3,210 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPFP49454 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.8■□□□□ 0.44
CENPFP49454 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC17.8■□□□□ 0.44
CENPFP49454 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.8■□□□□ 0.44
CENPFP49454 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC17.8■□□□□ 0.44
CENPFP49454 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.8■□□□□ 0.44
CENPFP49454 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.8■□□□□ 0.44
CENPFP49454 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.8■□□□□ 0.44
CENPFP49454 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CENPFP49454 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CENPFP49454 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC17.8■□□□□ 0.44
CENPFP49454 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.8■□□□□ 0.44
CENPFP49454 AC005622.1-201ENST00000636801 1703 ntBASIC17.8■□□□□ 0.44
CENPFP49454 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CENPFP49454 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.8■□□□□ 0.44
CENPFP49454 CYP46A4P-201ENST00000414953 267 ntBASIC17.8■□□□□ 0.44
CENPFP49454 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.8■□□□□ 0.44
CENPFP49454 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.8■□□□□ 0.44
CENPFP49454 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC17.8■□□□□ 0.44
CENPFP49454 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC17.8■□□□□ 0.44
CENPFP49454 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CENPFP49454 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.8■□□□□ 0.44
CENPFP49454 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CENPFP49454 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.8■□□□□ 0.44
CENPFP49454 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CENPFP49454 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.79■□□□□ 0.44
CENPFP49454 AC026410.3-201ENST00000514280 936 ntBASIC17.79■□□□□ 0.44
CENPFP49454 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.79■□□□□ 0.44
CENPFP49454 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC17.79■□□□□ 0.44
CENPFP49454 AC124947.2-201ENST00000547118 1133 ntBASIC17.79■□□□□ 0.44
CENPFP49454 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CENPFP49454 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.79■□□□□ 0.44
CENPFP49454 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CENPFP49454 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
CENPFP49454 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.79■□□□□ 0.44
CENPFP49454 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC17.79■□□□□ 0.44
CENPFP49454 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.79■□□□□ 0.44
CENPFP49454 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.79■□□□□ 0.44
CENPFP49454 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CENPFP49454 AC016396.2-201ENST00000562575 1417 ntBASIC17.79■□□□□ 0.44
CENPFP49454 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CENPFP49454 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.78■□□□□ 0.44
CENPFP49454 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 KRT18P66-201ENST00000452970 1269 ntBASIC17.78■□□□□ 0.44
CENPFP49454 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 MIR4750-201ENST00000584564 56 ntBASIC17.78■□□□□ 0.44
CENPFP49454 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.78■□□□□ 0.44
CENPFP49454 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC17.78■□□□□ 0.44
CENPFP49454 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 PARVG-202ENST00000415224 999 ntTSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC17.78■□□□□ 0.44
CENPFP49454 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.78■□□□□ 0.44
CENPFP49454 AC126915.1-201ENST00000522847 1038 ntBASIC17.78■□□□□ 0.44
CENPFP49454 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CENPFP49454 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.78■□□□□ 0.44
CENPFP49454 HLA-C-210ENST00000640219 976 ntBASIC17.78■□□□□ 0.44
CENPFP49454 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CENPFP49454 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms