Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.96■□□□□ 0.31
LHX1P48742 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.96■□□□□ 0.31
LHX1P48742 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.96■□□□□ 0.31
LHX1P48742 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 AL035633.1-201ENST00000406139 838 ntBASIC16.96■□□□□ 0.31
LHX1P48742 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 COX20P2-201ENST00000452636 358 ntBASIC16.96■□□□□ 0.31
LHX1P48742 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.96■□□□□ 0.31
LHX1P48742 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 AC092337.1-201ENST00000568699 1129 ntBASIC16.96■□□□□ 0.31
LHX1P48742 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LHX1P48742 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.96■□□□□ 0.31
LHX1P48742 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.96■□□□□ 0.31
LHX1P48742 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
LHX1P48742 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
LHX1P48742 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.96■□□□□ 0.3
LHX1P48742 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LHX1P48742 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.96■□□□□ 0.3
LHX1P48742 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LHX1P48742 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.95■□□□□ 0.3
LHX1P48742 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LHX1P48742 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.95■□□□□ 0.3
LHX1P48742 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.95■□□□□ 0.3
LHX1P48742 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.95■□□□□ 0.3
LHX1P48742 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.95■□□□□ 0.3
LHX1P48742 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.95■□□□□ 0.3
LHX1P48742 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.95■□□□□ 0.3
LHX1P48742 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.95■□□□□ 0.3
LHX1P48742 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.95■□□□□ 0.3
LHX1P48742 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.95■□□□□ 0.3
LHX1P48742 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LHX1P48742 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
LHX1P48742 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LHX1P48742 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.94■□□□□ 0.3
LHX1P48742 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.94■□□□□ 0.3
LHX1P48742 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 AC069224.1-201ENST00000566372 1715 ntBASIC16.94■□□□□ 0.3
LHX1P48742 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LHX1P48742 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.94■□□□□ 0.3
LHX1P48742 SPDYE19P-201ENST00000338590 713 ntBASIC16.94■□□□□ 0.3
LHX1P48742 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LHX1P48742 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 MEP1AP4-201ENST00000423244 1087 ntBASIC16.94■□□□□ 0.3
LHX1P48742 AL353779.1-201ENST00000434793 351 ntBASIC16.94■□□□□ 0.3
LHX1P48742 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.94■□□□□ 0.3
LHX1P48742 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.94■□□□□ 0.3
LHX1P48742 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.94■□□□□ 0.3
LHX1P48742 AC093004.1-201ENST00000508850 424 ntBASIC16.94■□□□□ 0.3
LHX1P48742 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.94■□□□□ 0.3
LHX1P48742 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LHX1P48742 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.94■□□□□ 0.3
LHX1P48742 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms