Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 FAM210CP-201ENST00000445714 574 ntBASIC15.42■□□□□ 0.06
MSX2P35548 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.42■□□□□ 0.06
MSX2P35548 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 AL589182.2-201ENST00000619332 1049 ntBASIC15.42■□□□□ 0.06
MSX2P35548 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
MSX2P35548 AP001350.2-201ENST00000625104 1094 ntBASIC15.42■□□□□ 0.06
MSX2P35548 AF228730.7-201ENST00000641842 219 ntBASIC15.42■□□□□ 0.06
MSX2P35548 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
MSX2P35548 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
MSX2P35548 LINC00528-201ENST00000600723 2160 ntBASIC15.42■□□□□ 0.06
MSX2P35548 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.42■□□□□ 0.06
MSX2P35548 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
MSX2P35548 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
MSX2P35548 U82695.1-201ENST00000635752 1889 ntBASIC15.42■□□□□ 0.06
MSX2P35548 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSX2P35548 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 AC007191.1-201ENST00000623179 2995 ntBASIC15.41■□□□□ 0.06
MSX2P35548 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
MSX2P35548 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.41■□□□□ 0.06
MSX2P35548 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.41■□□□□ 0.06
MSX2P35548 FAM86EP-206ENST00000510506 987 ntBASIC15.41■□□□□ 0.06
MSX2P35548 KRT18P21-201ENST00000515767 1272 ntBASIC15.41■□□□□ 0.06
MSX2P35548 RN7SL850P-201ENST00000579959 291 ntBASIC15.41■□□□□ 0.06
MSX2P35548 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.41■□□□□ 0.06
MSX2P35548 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.41■□□□□ 0.06
MSX2P35548 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.41■□□□□ 0.06
MSX2P35548 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.41■□□□□ 0.06
MSX2P35548 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSX2P35548 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.4■□□□□ 0.06
MSX2P35548 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.4■□□□□ 0.06
MSX2P35548 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.4■□□□□ 0.06
MSX2P35548 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.4■□□□□ 0.06
MSX2P35548 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.4■□□□□ 0.06
MSX2P35548 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSX2P35548 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
MSX2P35548 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms