Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 COX6A1P2-201ENST00000620597 330 ntBASIC18.57■□□□□ 0.56
SCN4AP35499 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN4AP35499 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN4AP35499 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SCN4AP35499 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN4AP35499 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN4AP35499 AL138799.1-201ENST00000448213 1675 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.56■□□□□ 0.56
SCN4AP35499 AC134407.2-201ENST00000625089 1978 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN4AP35499 GHSR-202ENST00000427970 912 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 AC098935.1-201ENST00000446057 611 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN4AP35499 AL391280.1-201ENST00000506969 1062 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN4AP35499 AC103988.2-201ENST00000561804 725 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 SYT17-208ENST00000568433 812 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN4AP35499 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN4AP35499 MIR3147-201ENST00000577811 66 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 ENPP7P14-201ENST00000621765 1040 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 AP001002.3-201ENST00000623482 206 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.56■□□□□ 0.56
SCN4AP35499 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.56■□□□□ 0.56
SCN4AP35499 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.56■□□□□ 0.56
SCN4AP35499 AC148477.4-201ENST00000613430 1793 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 TPM3P8-201ENST00000330554 643 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN4AP35499 HIST2H2BB-201ENST00000449108 381 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN4AP35499 MIR6756-201ENST00000616240 63 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 AL023803.2-201ENST00000620080 638 ntBASIC18.56■□□□□ 0.56
SCN4AP35499 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.56■□□□□ 0.56
SCN4AP35499 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN4AP35499 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN4AP35499 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SCN4AP35499 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN4AP35499 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.55■□□□□ 0.56
SCN4AP35499 CFL1-206ENST00000527344 962 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN4AP35499 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.55■□□□□ 0.56
SCN4AP35499 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18.55■□□□□ 0.56
SCN4AP35499 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SCN4AP35499 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SCN4AP35499 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN4AP35499 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SCN4AP35499 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN4AP35499 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SCN4AP35499 AC060834.1-201ENST00000443027 2032 ntBASIC18.55■□□□□ 0.56
SCN4AP35499 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SCN4AP35499 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.54■□□□□ 0.56
SCN4AP35499 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SCN4AP35499 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.54■□□□□ 0.56
SCN4AP35499 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.54■□□□□ 0.56
SCN4AP35499 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.54■□□□□ 0.56
SCN4AP35499 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.54■□□□□ 0.56
SCN4AP35499 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN4AP35499 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms