Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
HOXD3P31249 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12.46□□□□□ -0.41
HOXD3P31249 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 SPDYE22P-201ENST00000582158 798 ntBASIC12.46□□□□□ -0.41
HOXD3P31249 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.46□□□□□ -0.41
HOXD3P31249 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 MIR4321-201ENST00000592276 80 ntBASIC12.46□□□□□ -0.41
HOXD3P31249 AC026979.3-201ENST00000607315 403 ntBASIC12.46□□□□□ -0.41
HOXD3P31249 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
HOXD3P31249 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
HOXD3P31249 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXD3P31249 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXD3P31249 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXD3P31249 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXD3P31249 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
HOXD3P31249 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXD3P31249 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC12.46□□□□□ -0.42
HOXD3P31249 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
HOXD3P31249 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC12.46□□□□□ -0.42
HOXD3P31249 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC12.46□□□□□ -0.42
HOXD3P31249 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
HOXD3P31249 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
HOXD3P31249 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
HOXD3P31249 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC12.45□□□□□ -0.42
HOXD3P31249 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 OR8S1-201ENST00000310194 1080 ntBASIC12.45□□□□□ -0.42
HOXD3P31249 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXD3P31249 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXD3P31249 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXD3P31249 KRT17P7-201ENST00000451704 1104 ntBASIC12.45□□□□□ -0.42
HOXD3P31249 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.45□□□□□ -0.42
HOXD3P31249 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 AC105021.1-202ENST00000570572 669 ntBASIC12.45□□□□□ -0.42
HOXD3P31249 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.45□□□□□ -0.42
HOXD3P31249 AL589739.1-201ENST00000607720 493 ntBASIC12.45□□□□□ -0.42
HOXD3P31249 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 AL662844.4-201ENST00000606367 2838 ntBASIC12.45□□□□□ -0.42
HOXD3P31249 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXD3P31249 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXD3P31249 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXD3P31249 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXD3P31249 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
HOXD3P31249 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
HOXD3P31249 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.44□□□□□ -0.42
HOXD3P31249 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXD3P31249 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HOXD3P31249 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms