Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 AC254562.1-201ENST00000417586 456 ntBASIC18.56■□□□□ 0.56
CTDNEP1O95476 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 PHKG1P2-201ENST00000457537 863 ntBASIC18.56■□□□□ 0.56
CTDNEP1O95476 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 AL450472.2-201ENST00000603663 1156 ntBASIC18.56■□□□□ 0.56
CTDNEP1O95476 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CTDNEP1O95476 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.56■□□□□ 0.56
CTDNEP1O95476 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 MIR4453-201ENST00000584019 89 ntBASIC18.55■□□□□ 0.56
CTDNEP1O95476 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTDNEP1O95476 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CTDNEP1O95476 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 AL139400.1-201ENST00000366220 510 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 SPDYE17-201ENST00000412399 783 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 CNN2P11-201ENST00000429351 262 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 AC026979.3-201ENST00000607315 403 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 AC003101.2-201ENST00000612557 442 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 AC007967.4-201ENST00000614700 386 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 AP001059.3-201ENST00000619053 235 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 AL596257.1-201ENST00000641463 2694 ntBASIC18.54■□□□□ 0.56
CTDNEP1O95476 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CTDNEP1O95476 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CTDNEP1O95476 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.53■□□□□ 0.56
CTDNEP1O95476 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTDNEP1O95476 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms