Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RAPGEF3O95398 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RAPGEF3O95398 ACTBP8-201ENST00000403258 1108 ntBASIC23.62■■□□□ 1.37
RAPGEF3O95398 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RAPGEF3O95398 KRT18P66-201ENST00000452970 1269 ntBASIC23.62■■□□□ 1.37
RAPGEF3O95398 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 RN7SL48P-201ENST00000579283 293 ntBASIC23.62■■□□□ 1.37
RAPGEF3O95398 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 AC091544.8-201ENST00000619490 361 ntBASIC23.62■■□□□ 1.37
RAPGEF3O95398 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RAPGEF3O95398 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RAPGEF3O95398 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC23.62■■□□□ 1.37
RAPGEF3O95398 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
RAPGEF3O95398 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RAPGEF3O95398 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC23.61■■□□□ 1.37
RAPGEF3O95398 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 RNU1-114P-201ENST00000365297 166 ntBASIC23.61■■□□□ 1.37
RAPGEF3O95398 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 AC007274.2-201ENST00000421675 662 ntBASIC23.61■■□□□ 1.37
RAPGEF3O95398 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC23.61■■□□□ 1.37
RAPGEF3O95398 LY6E-208ENST00000520531 490 ntTSL 2 BASIC23.61■■□□□ 1.37
RAPGEF3O95398 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC23.61■■□□□ 1.37
RAPGEF3O95398 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC23.61■■□□□ 1.37
RAPGEF3O95398 AC073352.2-201ENST00000609385 439 ntBASIC23.61■■□□□ 1.37
RAPGEF3O95398 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RAPGEF3O95398 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC23.61■■□□□ 1.37
RAPGEF3O95398 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC23.61■■□□□ 1.37
RAPGEF3O95398 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
RAPGEF3O95398 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RAPGEF3O95398 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
RAPGEF3O95398 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RAPGEF3O95398 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
RAPGEF3O95398 TPM3P8-201ENST00000330554 643 ntBASIC23.6■■□□□ 1.37
RAPGEF3O95398 KLF2P2-201ENST00000416807 1039 ntBASIC23.6■■□□□ 1.37
RAPGEF3O95398 AL596276.2-201ENST00000447525 331 ntBASIC23.6■■□□□ 1.37
RAPGEF3O95398 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 CMC2-214ENST00000565925 640 ntTSL 5 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC23.6■■□□□ 1.37
RAPGEF3O95398 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 BX539320.1-201ENST00000623759 877 ntBASIC23.59■■□□□ 1.37
RAPGEF3O95398 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 TK1-203ENST00000588734 1681 ntTSL 2 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RAPGEF3O95398 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC23.59■■□□□ 1.37
RAPGEF3O95398 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC23.58■■□□□ 1.37
RAPGEF3O95398 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC23.58■■□□□ 1.37
RAPGEF3O95398 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RAPGEF3O95398 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms