Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 YWHAZ-215ENST00000518736 883 ntTSL 319.82■□□□□ 0.761e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.551e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.551e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-214ENST00000517727 876 ntTSL 313.43□□□□□ -0.261e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-216ENST00000521309 1399 ntTSL 2 BASIC11.89□□□□□ -0.511e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-207ENST00000395958 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.571e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-212ENST00000480304 2247 ntTSL 211.46□□□□□ -0.581e-6■■■■■ 103.9
SF3B1O75533 YWHAZ-217ENST00000521328 511 ntTSL 511.37□□□□□ -0.591e-6■■■■■ 103.9
SF3B1O75533 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.79■□□□□ 0.444e-6■■■■■ 103.9
SF3B1O75533 EIF3L-214ENST00000624234 2091 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.464e-6■■■■■ 103.9
SF3B1O75533 EIF3L-201ENST00000381683 1599 ntTSL 2 BASIC12.12□□□□□ -0.474e-6■■■■■ 103.9
SF3B1O75533 EIF3L-212ENST00000477256 1708 ntTSL 57.67□□□□□ -1.184e-6■■■■■ 103.9
SF3B1O75533 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC7.56□□□□□ -1.24e-6■■■■■ 103.9
SF3B1O75533 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC15.1■□□□□ 0.014e-7■■■■■ 103.9
SF3B1O75533 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.24e-7■■■■■ 103.9
SF3B1O75533 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.24e-7■■■■■ 103.9
SF3B1O75533 NFIA-210ENST00000479364 1010 ntTSL 512.62□□□□□ -0.393e-7■■■■■ 103.8
SF3B1O75533 NFIA-209ENST00000476646 730 ntTSL 34.85□□□□□ -1.633e-7■■■■■ 103.8
SF3B1O75533 CTSB-233ENST00000534636 633 ntTSL 420.39■□□□□ 0.851e-8■■■■■ 103.8
SF3B1O75533 CTSB-229ENST00000533572 975 ntTSL 318.65■□□□□ 0.581e-8■■■■■ 103.8
SF3B1O75533 CTSB-217ENST00000530296 561 ntTSL 415.25■□□□□ 0.031e-8■■■■■ 103.8
SF3B1O75533 NUP188-205ENST00000477069 2941 ntTSL 1 (best)11.91□□□□□ -0.52e-6■■■■■ 103.8
SF3B1O75533 NUP188-201ENST00000372577 5689 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.72e-6■■■■■ 103.8
SF3B1O75533 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.434e-6■■■■■ 103.8
SF3B1O75533 SPATS2-212ENST00000549298 643 ntTSL 326.12■■□□□ 1.772e-6■■■■■ 103.8
SF3B1O75533 SPATS2-218ENST00000551540 720 ntTSL 525.01■■□□□ 1.592e-6■■■■■ 103.8
SF3B1O75533 SPATS2-211ENST00000549179 570 ntTSL 425.01■■□□□ 1.592e-6■■■■■ 103.8
SF3B1O75533 SPATS2-209ENST00000548777 505 ntTSL 324■■□□□ 1.432e-6■■■■■ 103.8
SF3B1O75533 SPATS2-214ENST00000549412 2781 ntTSL 221.92■■□□□ 1.12e-6■■■■■ 103.8
SF3B1O75533 SPATS2-219ENST00000552171 465 ntTSL 519.13■□□□□ 0.652e-6■■■■■ 103.8
SF3B1O75533 SPATS2-205ENST00000548388 564 ntTSL 219.13■□□□□ 0.652e-6■■■■■ 103.8
SF3B1O75533 SPATS2-217ENST00000550997 675 ntTSL 516.36■□□□□ 0.212e-6■■■■■ 103.8
SF3B1O75533 SPATS2-216ENST00000550643 527 ntTSL 416.29■□□□□ 0.22e-6■■■■■ 103.8
SF3B1O75533 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.18■□□□□ 0.022e-6■■■■■ 103.8
SF3B1O75533 SPATS2-213ENST00000549375 1061 ntTSL 214.66□□□□□ -0.062e-6■■■■■ 103.8
SF3B1O75533 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.152e-6■■■■■ 103.8
SF3B1O75533 SPATS2-207ENST00000548710 558 ntTSL 413.64□□□□□ -0.232e-6■■■■■ 103.8
SF3B1O75533 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.242e-6■■■■■ 103.8
SF3B1O75533 SPATS2-222ENST00000552918 2993 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.172e-6■■■■■ 103.8
SF3B1O75533 SPATS2-204ENST00000548377 552 ntTSL 47.74□□□□□ -1.172e-6■■■■■ 103.8
SF3B1O75533 SPATS2-206ENST00000548654 546 ntTSL 31.79□□□□□ -2.122e-6■■■■■ 103.8
SF3B1O75533 SPATS2-215ENST00000549538 570 ntTSL 41.36□□□□□ -2.192e-6■■■■■ 103.8
SF3B1O75533 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.34e-6■■■■■ 103.8
SF3B1O75533 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.82■□□□□ 0.285e-6■■■■■ 103.8
SF3B1O75533 CERS2-209ENST00000482825 1618 ntTSL 513.95□□□□□ -0.184e-6■■■■■ 103.7
SF3B1O75533 CERS2-214ENST00000561294 1803 ntTSL 5 BASIC13.02□□□□□ -0.334e-6■■■■■ 103.7
SF3B1O75533 CERS2-213ENST00000560793 1661 ntTSL 1 (best)11.7□□□□□ -0.544e-6■■■■■ 103.7
SF3B1O75533 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.751e-6■■■■■ 103.7
SF3B1O75533 FNDC3B-207ENST00000469491 2916 ntTSL 217.48■□□□□ 0.393e-6■■■■■ 103.7
SF3B1O75533 TRIM65-203ENST00000540812 385 ntTSL 217.95■□□□□ 0.462e-6■■■■■ 103.7
SF3B1O75533 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC9□□□□□ -0.972e-6■■■■■ 103.7
SF3B1O75533 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.694e-6■■■■■ 103.6
SF3B1O75533 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.374e-6■■■■■ 103.6
SF3B1O75533 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.284e-7■■■■■ 103.6
SF3B1O75533 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.154e-6■■■■■ 103.6
SF3B1O75533 NPLOC4-203ENST00000570300 565 ntTSL 411.59□□□□□ -0.554e-6■■■■■ 103.6
SF3B1O75533 UIMC1-212ENST00000511320 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.574e-7■■■■■ 103.6
SF3B1O75533 UIMC1-204ENST00000503273 955 ntTSL 510.24□□□□□ -0.774e-7■■■■■ 103.6
SF3B1O75533 UIMC1-213ENST00000512031 2467 ntTSL 59.26□□□□□ -0.934e-7■■■■■ 103.6
SF3B1O75533 UIMC1-211ENST00000510698 1334 ntTSL 1 (best) BASIC8.83□□□□□ -14e-7■■■■■ 103.6
SF3B1O75533 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC7.45□□□□□ -1.224e-7■■■■■ 103.6
SF3B1O75533 TMEM164-207ENST00000471255 418 ntTSL 319.51■□□□□ 0.712e-6■■■■■ 103.6
SF3B1O75533 C9orf3-204ENST00000424143 1605 ntTSL 215.67■□□□□ 0.16e-6■■■■■ 103.6
SF3B1O75533 CCDC91-211ENST00000540794 518 ntTSL 33.04□□□□□ -1.923e-6■■■■■ 103.5
SF3B1O75533 CCDC91-204ENST00000536154 549 ntTSL 40.81□□□□□ -2.283e-6■■■■■ 103.5
SF3B1O75533 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.173e-6■■■■■ 103.5
SF3B1O75533 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.8□□□□□ -0.23e-6■■■■■ 103.5
SF3B1O75533 STIM1-209ENST00000527651 2184 ntTSL 1 (best) BASIC12.82□□□□□ -0.363e-6■■■■■ 103.5
SF3B1O75533 STIM1-204ENST00000525403 625 ntTSL 47.83□□□□□ -1.163e-6■■■■■ 103.5
SF3B1O75533 LRBA-211ENST00000513021 568 ntTSL 49.82□□□□□ -0.844e-6■■■■■ 103.5
SF3B1O75533 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.644e-6■■■■■ 103.5
SF3B1O75533 CROCCP2-207ENST00000640476 1750 ntTSL 521.57■■□□□ 1.044e-7■■■■■ 103.5
SF3B1O75533 DSCR4-202ENST00000398948 777 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.911e-6■■■■■ 103.4
SF3B1O75533 EXOSC7-207ENST00000481405 768 ntTSL 333.12■■■□□ 2.891e-6■■■■■ 103.4
SF3B1O75533 JMJD8-214ENST00000569441 1428 ntTSL 532.98■■■□□ 2.876e-6■■■■■ 103.4
SF3B1O75533 PRR5-205ENST00000431834 1612 ntTSL 531.83■■■□□ 2.696e-6■■■■■ 103.4
SF3B1O75533 JMJD8-212ENST00000568689 1998 ntTSL 330.94■■■□□ 2.546e-6■■■■■ 103.4
SF3B1O75533 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.541e-8■■■■■ 103.4
SF3B1O75533 EBPL-203ENST00000378270 579 ntTSL 2 BASIC30.81■■■□□ 2.522e-6■■■■■ 103.4
SF3B1O75533 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.66■■■□□ 2.342e-6■■■■■ 103.4
SF3B1O75533 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC29.34■■■□□ 2.291e-8■■■■■ 103.4
SF3B1O75533 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.16■■■□□ 2.261e-8■■■■■ 103.4
SF3B1O75533 JMJD8-209ENST00000567120 2205 ntTSL 1 (best)29.06■■■□□ 2.246e-6■■■■■ 103.4
SF3B1O75533 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.232e-12■■■■■ 103.4
SF3B1O75533 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC28.93■■■□□ 2.222e-6■■■■■ 103.4
SF3B1O75533 JMJD8-208ENST00000566199 719 ntTSL 328.77■■■□□ 2.26e-6■■■■■ 103.4
SF3B1O75533 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.181e-8■■■■■ 103.4
SF3B1O75533 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.181e-8■■■■■ 103.4
SF3B1O75533 U2AF1-206ENST00000464750 966 ntTSL 1 (best)28.43■■■□□ 2.146e-6■■■■■ 103.4
SF3B1O75533 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC28.42■■■□□ 2.141e-8■■■■■ 103.4
SF3B1O75533 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.136e-6■■■■■ 103.4
SF3B1O75533 EMID1-207ENST00000435427 482 ntTSL 528.32■■■□□ 2.121e-8■■■■■ 103.4
SF3B1O75533 NDUFS3-211ENST00000533507 1769 ntTSL 228.21■■■□□ 2.111e-8■■■■■ 103.4
SF3B1O75533 EBPL-206ENST00000473576 810 ntTSL 228.1■■■□□ 2.092e-6■■■■■ 103.4
SF3B1O75533 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.082e-6■■■■■ 103.4
SF3B1O75533 PPP4C-208ENST00000564966 1122 ntTSL 227.92■■■□□ 2.066e-6■■■■■ 103.4
SF3B1O75533 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC27.91■■■□□ 2.066e-6■■■■■ 103.4
SF3B1O75533 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.79■■■□□ 2.046e-6■■■■■ 103.4
SF3B1O75533 ARHGEF3-208ENST00000477440 587 ntTSL 327.63■■■□□ 2.011e-8■■■■■ 103.4
SF3B1O75533 EHMT2-208ENST00000465429 1454 ntTSL 227.51■■□□□ 1.991e-8■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1001.7 ms