Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 AL589702.1-201ENST00000641229 1509 ntBASIC16.65■□□□□ 0.26
PCDH9Q9HC56 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PCDH9Q9HC56 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PCDH9Q9HC56 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PCDH9Q9HC56 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.64■□□□□ 0.26
PCDH9Q9HC56 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PCDH9Q9HC56 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
PCDH9Q9HC56 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 KRT18P13-201ENST00000400056 1290 ntBASIC16.64■□□□□ 0.25
PCDH9Q9HC56 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 YBX1P5-201ENST00000509441 847 ntBASIC16.64■□□□□ 0.25
PCDH9Q9HC56 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 MIR4469-201ENST00000583919 79 ntBASIC16.64■□□□□ 0.25
PCDH9Q9HC56 AC026120.1-201ENST00000611536 926 ntBASIC16.64■□□□□ 0.25
PCDH9Q9HC56 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 SSR4P1-203ENST00000599569 2260 ntBASIC16.64■□□□□ 0.25
PCDH9Q9HC56 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PCDH9Q9HC56 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 AP001282.1-201ENST00000531301 1499 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SPDYE11-202ENST00000450699 704 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 RN7SL589P-201ENST00000481268 310 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SPDYE9P-201ENST00000570642 692 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SPDYE10P-202ENST00000612005 668 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SPDYE8P-202ENST00000612377 668 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 AP003680.1-201ENST00000598970 3660 ntBASIC16.63■□□□□ 0.25
PCDH9Q9HC56 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.63■□□□□ 0.25
PCDH9Q9HC56 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms