Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC087499.6-201ENST00000411576 835 ntBASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 SERBP1P5-201ENST00000510079 1181 ntBASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 RNA5-8SN1-201ENST00000610460 153 ntBASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 RNA5-8SN5-202ENST00000612463 153 ntBASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 RNA5-8SN4-201ENST00000613359 153 ntBASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 RNA5-8SN5-201ENST00000619471 153 ntBASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CHMP4AQ9BY43 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.45■□□□□ 0.87
CHMP4AQ9BY43 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CHMP4AQ9BY43 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC20.45■□□□□ 0.86
CHMP4AQ9BY43 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 AC136604.1-201ENST00000418535 575 ntBASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 DFFBP1-201ENST00000433250 979 ntBASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 AC004840.1-201ENST00000636359 365 ntBASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 AL109936.8-201ENST00000641772 604 ntBASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CHMP4AQ9BY43 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AC134407.2-201ENST00000625089 1978 ntBASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AZGP1P1-201ENST00000411909 902 ntBASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 DOC2GP-202ENST00000514950 1163 ntBASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 RRP7BP-205ENST00000566851 833 ntBASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 SRD5A3P1-201ENST00000603021 949 ntBASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AC004461.2-201ENST00000629517 803 ntBASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AL358472.5-202ENST00000641448 1267 ntBASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms