Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL139010.1-201ENST00000454878 894 ntBASIC12.46□□□□□ -0.41
CCDC140Q96MF4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 AC026979.3-201ENST00000607315 403 ntBASIC12.46□□□□□ -0.41
CCDC140Q96MF4 AL691403.2-201ENST00000618460 490 ntBASIC12.46□□□□□ -0.41
CCDC140Q96MF4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC12.46□□□□□ -0.41
CCDC140Q96MF4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.46□□□□□ -0.42
CCDC140Q96MF4 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AC004987.2-201ENST00000395959 1148 ntBASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 CCDC74BP1-201ENST00000508880 1123 ntBASIC12.45□□□□□ -0.42
CCDC140Q96MF4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 BANF1P1-201ENST00000553684 263 ntBASIC12.45□□□□□ -0.42
CCDC140Q96MF4 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 MIR6080-201ENST00000617359 66 ntBASIC12.45□□□□□ -0.42
CCDC140Q96MF4 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC12.45□□□□□ -0.42
CCDC140Q96MF4 CICP6-201ENST00000457191 2729 ntBASIC12.45□□□□□ -0.42
CCDC140Q96MF4 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 HLA-DQB2-231ENST00000435145 2026 ntBASIC12.44□□□□□ -0.42
CCDC140Q96MF4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
CCDC140Q96MF4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms