Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 LINC01922-201ENST00000562582 719 ntBASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 AC106730.1-201ENST00000566722 1090 ntBASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 AL049840.3-201ENST00000602669 611 ntBASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
DEPDC4Q8N2C3 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 SDCCAG3P1-201ENST00000589292 1150 ntBASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 FAM45BP-202ENST00000592932 1624 ntBASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 PPT1-215ENST00000641471 2368 ntBASIC15.1■□□□□ 0.01
DEPDC4Q8N2C3 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 AC098831.1-202ENST00000438821 336 ntBASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 MIR4492-201ENST00000581627 80 ntBASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 MPDU1-223ENST00000582151 728 ntBASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
DEPDC4Q8N2C3 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms