Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 UPF3AP3-201ENST00000420996 769 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AC069335.1-201ENST00000489972 472 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 YBX1P5-201ENST00000509441 847 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AC092865.5-201ENST00000545435 363 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 KRT8P23-201ENST00000560090 1207 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AC024267.1-201ENST00000582320 895 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 AC008677.1-201ENST00000519230 1561 ntBASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
CCDC116Q8IYX3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AC245100.5-201ENST00000452108 331 ntBASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 RNA5SP410-201ENST00000516285 106 ntBASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 SLC25A39P2-201ENST00000537614 270 ntBASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AC061975.2-201ENST00000581722 295 ntBASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AC022145.2-201ENST00000598203 171 ntBASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.22■□□□□ 0.03
CCDC116Q8IYX3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CCDC116Q8IYX3 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms