Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 NUS1P3-201ENST00000423502 862 ntBASIC13.17□□□□□ -0.3
VPS13CQ709C8 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
VPS13CQ709C8 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC13.17□□□□□ -0.3
VPS13CQ709C8 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 UPF3AP2-201ENST00000457924 1132 ntBASIC13.16□□□□□ -0.3
VPS13CQ709C8 RN7SL720P-201ENST00000488178 304 ntBASIC13.16□□□□□ -0.3
VPS13CQ709C8 CFL1-214ENST00000534769 758 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 AC136604.1-201ENST00000418535 575 ntBASIC13.16□□□□□ -0.3
VPS13CQ709C8 AC016700.1-201ENST00000429424 312 ntBASIC13.16□□□□□ -0.3
VPS13CQ709C8 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 VDAC1P7-201ENST00000462417 847 ntBASIC13.16□□□□□ -0.3
VPS13CQ709C8 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 AC134312.5-201ENST00000568031 1313 ntBASIC13.16□□□□□ -0.3
VPS13CQ709C8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 AC104306.2-201ENST00000451877 341 ntBASIC13.16□□□□□ -0.3
VPS13CQ709C8 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.16□□□□□ -0.3
VPS13CQ709C8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
VPS13CQ709C8 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 AP001063.1-201ENST00000568332 529 ntBASIC13.15□□□□□ -0.3
VPS13CQ709C8 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 AC074338.1-201ENST00000416825 156 ntBASIC13.15□□□□□ -0.3
VPS13CQ709C8 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 AC009090.5-201ENST00000624886 2285 ntBASIC13.15□□□□□ -0.3
VPS13CQ709C8 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.15□□□□□ -0.3
VPS13CQ709C8 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
VPS13CQ709C8 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
VPS13CQ709C8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.15□□□□□ -0.31
VPS13CQ709C8 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.31
VPS13CQ709C8 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
VPS13CQ709C8 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
VPS13CQ709C8 IGF1-203ENST00000392904 761 ntTSL 5 BASIC13.15□□□□□ -0.31
VPS13CQ709C8 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.15□□□□□ -0.31
VPS13CQ709C8 AC078819.1-201ENST00000547454 765 ntBASIC13.15□□□□□ -0.31
VPS13CQ709C8 AC012085.1-201ENST00000548270 765 ntBASIC13.15□□□□□ -0.31
VPS13CQ709C8 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.15□□□□□ -0.31
VPS13CQ709C8 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.15□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms