Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ATL3Q6DD88 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 FAM220BP-201ENST00000377689 816 ntBASIC18.36■□□□□ 0.53
ATL3Q6DD88 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 RPS8P6-201ENST00000426177 609 ntBASIC18.36■□□□□ 0.53
ATL3Q6DD88 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 FAM86C2P-203ENST00000528684 1004 ntBASIC18.36■□□□□ 0.53
ATL3Q6DD88 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 MIR4313-201ENST00000580760 101 ntBASIC18.36■□□□□ 0.53
ATL3Q6DD88 REXO1L1P-202ENST00000608646 1974 ntBASIC18.36■□□□□ 0.53
ATL3Q6DD88 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.36■□□□□ 0.53
ATL3Q6DD88 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATL3Q6DD88 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 AP003680.1-201ENST00000598970 3660 ntBASIC18.35■□□□□ 0.53
ATL3Q6DD88 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 AC007967.2-201ENST00000432613 625 ntBASIC18.35■□□□□ 0.53
ATL3Q6DD88 AL591424.1-201ENST00000442569 1213 ntBASIC18.35■□□□□ 0.53
ATL3Q6DD88 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATL3Q6DD88 AC138035.3-201ENST00000622706 2791 ntBASIC18.35■□□□□ 0.53
ATL3Q6DD88 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.35■□□□□ 0.53
ATL3Q6DD88 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATL3Q6DD88 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATL3Q6DD88 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ATL3Q6DD88 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATL3Q6DD88 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms