Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSRP1Q08945 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSRP1Q08945 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.68■□□□□ 0.58
SSRP1Q08945 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.68■□□□□ 0.58
SSRP1Q08945 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.68■□□□□ 0.58
SSRP1Q08945 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.68■□□□□ 0.58
SSRP1Q08945 AC027612.4-201ENST00000605371 583 ntBASIC18.68■□□□□ 0.58
SSRP1Q08945 AC026979.3-201ENST00000607315 403 ntBASIC18.68■□□□□ 0.58
SSRP1Q08945 AC003101.2-201ENST00000612557 442 ntBASIC18.68■□□□□ 0.58
SSRP1Q08945 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSRP1Q08945 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSRP1Q08945 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSRP1Q08945 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.68■□□□□ 0.58
SSRP1Q08945 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.68■□□□□ 0.58
SSRP1Q08945 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSRP1Q08945 BNIP3P1-202ENST00000550043 1585 ntBASIC18.68■□□□□ 0.58
SSRP1Q08945 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.67■□□□□ 0.58
SSRP1Q08945 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.67■□□□□ 0.58
SSRP1Q08945 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SSRP1Q08945 AC004987.2-201ENST00000395959 1148 ntBASIC18.67■□□□□ 0.58
SSRP1Q08945 AL353705.2-201ENST00000428243 662 ntBASIC18.67■□□□□ 0.58
SSRP1Q08945 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.67■□□□□ 0.58
SSRP1Q08945 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.67■□□□□ 0.58
SSRP1Q08945 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.67■□□□□ 0.58
SSRP1Q08945 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
SSRP1Q08945 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
SSRP1Q08945 AC079781.4-201ENST00000641908 219 ntBASIC18.67■□□□□ 0.58
SSRP1Q08945 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SSRP1Q08945 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC18.67■□□□□ 0.58
SSRP1Q08945 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSRP1Q08945 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SSRP1Q08945 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.66■□□□□ 0.58
SSRP1Q08945 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.66■□□□□ 0.58
SSRP1Q08945 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 PRAL-201ENST00000624952 3286 ntBASIC18.66■□□□□ 0.58
SSRP1Q08945 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.66■□□□□ 0.58
SSRP1Q08945 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.66■□□□□ 0.58
SSRP1Q08945 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.66■□□□□ 0.58
SSRP1Q08945 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.66■□□□□ 0.58
SSRP1Q08945 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.66■□□□□ 0.58
SSRP1Q08945 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
SSRP1Q08945 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 AP003680.1-201ENST00000598970 3660 ntBASIC18.66■□□□□ 0.58
SSRP1Q08945 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.66■□□□□ 0.58
SSRP1Q08945 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.66■□□□□ 0.58
SSRP1Q08945 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SSRP1Q08945 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.66■□□□□ 0.58
SSRP1Q08945 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SSRP1Q08945 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSRP1Q08945 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SSRP1Q08945 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.65■□□□□ 0.58
SSRP1Q08945 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SSRP1Q08945 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms