Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
TFF3Q07654 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
TFF3Q07654 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.13□□□□□ -0.15
TFF3Q07654 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 HIST3H2BA-201ENST00000436555 524 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 AC092658.1-201ENST00000505836 891 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.13□□□□□ -0.15
TFF3Q07654 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.13□□□□□ -0.15
TFF3Q07654 SNX29P1-201ENST00000548357 1007 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
TFF3Q07654 AP005482.1-201ENST00000563722 1273 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 AC008735.3-201ENST00000596646 500 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
TFF3Q07654 COX11-210ENST00000639671 696 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
TFF3Q07654 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 AC060834.1-201ENST00000443027 2032 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 FER1L4-210ENST00000615531 5998 ntBASIC14.13□□□□□ -0.15
TFF3Q07654 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.13□□□□□ -0.15
TFF3Q07654 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
TFF3Q07654 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
TFF3Q07654 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
TFF3Q07654 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.12□□□□□ -0.15
TFF3Q07654 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.12□□□□□ -0.15
TFF3Q07654 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.12□□□□□ -0.15
TFF3Q07654 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.12□□□□□ -0.15
TFF3Q07654 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.12□□□□□ -0.15
TFF3Q07654 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.12□□□□□ -0.15
TFF3Q07654 AC234783.1-201ENST00000441761 496 ntBASIC14.12□□□□□ -0.15
TFF3Q07654 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.12□□□□□ -0.15
TFF3Q07654 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.12□□□□□ -0.15
TFF3Q07654 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
TFF3Q07654 MIR8072-201ENST00000614241 80 ntBASIC14.12□□□□□ -0.15
TFF3Q07654 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 CDC14C-201ENST00000428251 1719 ntBASIC14.12□□□□□ -0.15
TFF3Q07654 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.12□□□□□ -0.15
TFF3Q07654 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.12□□□□□ -0.15
TFF3Q07654 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
TFF3Q07654 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
TFF3Q07654 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms