Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.91□□□□□ -0.02
RNF4P78317 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.91□□□□□ -0.02
RNF4P78317 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.91□□□□□ -0.02
RNF4P78317 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 MIR648-201ENST00000385046 94 ntBASIC14.91□□□□□ -0.02
RNF4P78317 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.91□□□□□ -0.02
RNF4P78317 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.91□□□□□ -0.02
RNF4P78317 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 AL512638.1-201ENST00000457493 794 ntBASIC14.91□□□□□ -0.02
RNF4P78317 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.91□□□□□ -0.02
RNF4P78317 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.91□□□□□ -0.02
RNF4P78317 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.91□□□□□ -0.02
RNF4P78317 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
RNF4P78317 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.91□□□□□ -0.02
RNF4P78317 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.91□□□□□ -0.02
RNF4P78317 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
RNF4P78317 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RNF4P78317 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.91□□□□□ -0.02
RNF4P78317 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.91□□□□□ -0.02
RNF4P78317 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
RNF4P78317 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
RNF4P78317 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
RNF4P78317 INGX-202ENST00000489074 768 ntBASIC14.9□□□□□ -0.02
RNF4P78317 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 SPCS2P1-201ENST00000561636 679 ntBASIC14.9□□□□□ -0.02
RNF4P78317 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.9□□□□□ -0.02
RNF4P78317 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
RNF4P78317 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.9□□□□□ -0.02
RNF4P78317 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.9□□□□□ -0.02
RNF4P78317 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.9□□□□□ -0.02
RNF4P78317 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
RNF4P78317 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.9□□□□□ -0.02
RNF4P78317 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
RNF4P78317 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 AP001282.1-201ENST00000531301 1499 ntBASIC14.89□□□□□ -0.03
RNF4P78317 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
RNF4P78317 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.89□□□□□ -0.03
RNF4P78317 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 CYP2T1P-202ENST00000641596 2535 ntBASIC14.89□□□□□ -0.03
RNF4P78317 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.89□□□□□ -0.03
RNF4P78317 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
RNF4P78317 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms