Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH6P55285 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDH6P55285 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CDH6P55285 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CDH6P55285 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CDH6P55285 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 MIR346-201ENST00000362234 95 ntBASIC16.78■□□□□ 0.28
CDH6P55285 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.78■□□□□ 0.28
CDH6P55285 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.78■□□□□ 0.28
CDH6P55285 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 CEND1P1-201ENST00000451006 455 ntBASIC16.78■□□□□ 0.28
CDH6P55285 RNA5SP410-201ENST00000516285 106 ntBASIC16.78■□□□□ 0.28
CDH6P55285 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.78■□□□□ 0.28
CDH6P55285 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CDH6P55285 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 AC134407.2-201ENST00000625089 1978 ntBASIC16.78■□□□□ 0.28
CDH6P55285 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH6P55285 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.78■□□□□ 0.28
CDH6P55285 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CDH6P55285 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CDH6P55285 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH6P55285 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH6P55285 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDH6P55285 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CDH6P55285 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH6P55285 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
CDH6P55285 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDH6P55285 UXT-AS1-201ENST00000590504 1525 ntBASIC16.77■□□□□ 0.28
CDH6P55285 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CDH6P55285 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CDH6P55285 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CDH6P55285 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH6P55285 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH6P55285 AL592309.1-201ENST00000443127 649 ntBASIC16.77■□□□□ 0.28
CDH6P55285 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CDH6P55285 YBX1P5-201ENST00000509441 847 ntBASIC16.77■□□□□ 0.28
CDH6P55285 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH6P55285 KRT8P23-201ENST00000560090 1207 ntBASIC16.77■□□□□ 0.28
CDH6P55285 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.77■□□□□ 0.28
CDH6P55285 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH6P55285 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.77■□□□□ 0.28
CDH6P55285 AC010327.4-202ENST00000591484 748 ntBASIC16.77■□□□□ 0.28
CDH6P55285 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.77■□□□□ 0.28
CDH6P55285 AP001282.1-201ENST00000531301 1499 ntBASIC16.77■□□□□ 0.28
CDH6P55285 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.77■□□□□ 0.27
CDH6P55285 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.27
CDH6P55285 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.77■□□□□ 0.27
CDH6P55285 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.77■□□□□ 0.27
CDH6P55285 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.77■□□□□ 0.27
CDH6P55285 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
CDH6P55285 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CDH6P55285 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CDH6P55285 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CDH6P55285 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 RPSAP43-201ENST00000402237 625 ntBASIC16.76■□□□□ 0.27
CDH6P55285 UPF3AP3-201ENST00000420996 769 ntBASIC16.76■□□□□ 0.27
CDH6P55285 AC069335.1-201ENST00000489972 472 ntBASIC16.76■□□□□ 0.27
CDH6P55285 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDH6P55285 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.76■□□□□ 0.27
CDH6P55285 PUS1-205ENST00000535067 838 ntTSL 3 BASIC16.76■□□□□ 0.27
CDH6P55285 AC092865.5-201ENST00000545435 363 ntBASIC16.76■□□□□ 0.27
CDH6P55285 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.76■□□□□ 0.27
CDH6P55285 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms