Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SOX3P41225 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX3P41225 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
SOX3P41225 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 AL031731.1-201ENST00000642131 2094 ntBASIC15.22■□□□□ 0.03
SOX3P41225 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SOX3P41225 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX3P41225 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX3P41225 RBPMS2P1-201ENST00000437762 623 ntBASIC15.22■□□□□ 0.03
SOX3P41225 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX3P41225 SLC25A39P2-201ENST00000537614 270 ntBASIC15.22■□□□□ 0.03
SOX3P41225 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.22■□□□□ 0.03
SOX3P41225 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.22■□□□□ 0.03
SOX3P41225 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX3P41225 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SOX3P41225 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX3P41225 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.22■□□□□ 0.03
SOX3P41225 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.22■□□□□ 0.03
SOX3P41225 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SOX3P41225 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 AC126177.1-201ENST00000547829 2218 ntBASIC15.21■□□□□ 0.03
SOX3P41225 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 AP002414.2-201ENST00000591780 3365 ntBASIC15.21■□□□□ 0.03
SOX3P41225 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.21■□□□□ 0.03
SOX3P41225 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
SOX3P41225 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
SOX3P41225 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.21■□□□□ 0.03
SOX3P41225 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
SOX3P41225 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.21■□□□□ 0.03
SOX3P41225 AL645939.2-201ENST00000427340 991 ntBASIC15.21■□□□□ 0.03
SOX3P41225 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.21■□□□□ 0.03
SOX3P41225 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.21■□□□□ 0.03
SOX3P41225 GPS2P2-201ENST00000430745 888 ntBASIC15.21■□□□□ 0.03
SOX3P41225 HLA-J-202ENST00000469281 1241 ntBASIC15.21■□□□□ 0.03
SOX3P41225 PRYP6-201ENST00000514804 343 ntBASIC15.21■□□□□ 0.03
SOX3P41225 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
SOX3P41225 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.21■□□□□ 0.03
SOX3P41225 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
SOX3P41225 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.21■□□□□ 0.03
SOX3P41225 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SOX3P41225 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
SOX3P41225 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.21■□□□□ 0.03
SOX3P41225 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
SOX3P41225 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
SOX3P41225 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
SOX3P41225 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
SOX3P41225 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.21■□□□□ 0.02
SOX3P41225 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
SOX3P41225 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
SOX3P41225 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.21■□□□□ 0.02
SOX3P41225 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.21■□□□□ 0.02
SOX3P41225 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.2■□□□□ 0.02
SOX3P41225 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SOX3P41225 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
SOX3P41225 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.2■□□□□ 0.02
SOX3P41225 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
SOX3P41225 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.2■□□□□ 0.02
SOX3P41225 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms