Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A3P12111 RPL18AP3-201ENST00000462885 528 ntBASIC16.35■□□□□ 0.21
COL6A3P12111 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC16.35■□□□□ 0.21
COL6A3P12111 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A3P12111 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL6A3P12111 AC073911.3-201ENST00000624401 631 ntBASIC16.35■□□□□ 0.21
COL6A3P12111 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A3P12111 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A3P12111 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A3P12111 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 ISCA2P1-201ENST00000425548 448 ntBASIC16.34■□□□□ 0.21
COL6A3P12111 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A3P12111 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A3P12111 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A3P12111 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A3P12111 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 AL354751.1-201ENST00000412768 1863 ntBASIC16.34■□□□□ 0.21
COL6A3P12111 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A3P12111 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 RN7SKP214-201ENST00000364208 315 ntBASIC16.34■□□□□ 0.21
COL6A3P12111 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL6A3P12111 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
COL6A3P12111 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A3P12111 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC16.34■□□□□ 0.21
COL6A3P12111 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A3P12111 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.34■□□□□ 0.21
COL6A3P12111 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 AL645728.1-201ENST00000366221 2101 ntBASIC16.34■□□□□ 0.21
COL6A3P12111 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
COL6A3P12111 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC16.34■□□□□ 0.21
COL6A3P12111 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.34■□□□□ 0.21
COL6A3P12111 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
COL6A3P12111 AC068587.8-201ENST00000641239 219 ntBASIC16.34■□□□□ 0.21
COL6A3P12111 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
COL6A3P12111 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.33■□□□□ 0.21
COL6A3P12111 AC020931.1-201ENST00000589622 1346 ntBASIC16.33■□□□□ 0.21
COL6A3P12111 KRT8P39-201ENST00000396270 1433 ntBASIC16.33■□□□□ 0.21
COL6A3P12111 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC16.33■□□□□ 0.21
COL6A3P12111 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL6A3P12111 AC148477.4-201ENST00000613430 1793 ntBASIC16.33■□□□□ 0.21
COL6A3P12111 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL6A3P12111 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
COL6A3P12111 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC16.33■□□□□ 0.21
COL6A3P12111 AC104073.2-201ENST00000453737 312 ntBASIC16.33■□□□□ 0.21
COL6A3P12111 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
COL6A3P12111 AP003171.2-201ENST00000528208 925 ntBASIC16.33■□□□□ 0.21
COL6A3P12111 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
COL6A3P12111 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC16.33■□□□□ 0.21
COL6A3P12111 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.33■□□□□ 0.21
COL6A3P12111 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.33■□□□□ 0.21
COL6A3P12111 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
COL6A3P12111 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A3P12111 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.33■□□□□ 0.2
COL6A3P12111 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A3P12111 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A3P12111 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COL6A3P12111 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
COL6A3P12111 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A3P12111 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A3P12111 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
COL6A3P12111 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A3P12111 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.32■□□□□ 0.2
COL6A3P12111 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 POM121L8P-201ENST00000417732 1281 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 POM121L9P-203ENST00000441984 1285 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 IGKV1OR-2-201ENST00000457995 350 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A3P12111 KRT18P25-201ENST00000508931 1278 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.32■□□□□ 0.2
COL6A3P12111 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A3P12111 MIR4321-201ENST00000592276 80 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A3P12111 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 AC020916.1-201ENST00000587762 1774 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 AC106820.2-201ENST00000563775 3264 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.32■□□□□ 0.2
COL6A3P12111 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.32■□□□□ 0.2
COL6A3P12111 LYPLA2P1-203ENST00000447689 696 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 THY1-209ENST00000580275 578 ntTSL 3 BASIC16.32■□□□□ 0.2
COL6A3P12111 AC103810.10-201ENST00000606504 343 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 MEG3_2.1-201ENST00000611456 105 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.32■□□□□ 0.2
COL6A3P12111 AC005618.3-201ENST00000624928 458 ntBASIC16.32■□□□□ 0.2
COL6A3P12111 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
COL6A3P12111 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL6A3P12111 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms