Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HYMAI.1-201ENST00000620949 238 ntBASIC16.27■□□□□ 0.2
VIMP08670 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VIMP08670 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VIMP08670 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VIMP08670 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VIMP08670 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.27■□□□□ 0.19
VIMP08670 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.27■□□□□ 0.19
VIMP08670 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 TP73-AS1-210ENST00000637775 1455 ntBASIC16.27■□□□□ 0.19
VIMP08670 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.27■□□□□ 0.19
VIMP08670 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
VIMP08670 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.19
VIMP08670 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.27■□□□□ 0.19
VIMP08670 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.27■□□□□ 0.19
VIMP08670 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.27■□□□□ 0.19
VIMP08670 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
VIMP08670 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VIMP08670 AC232323.1-201ENST00000540724 2099 ntBASIC16.26■□□□□ 0.19
VIMP08670 REXO1L5P-201ENST00000622260 2098 ntBASIC16.26■□□□□ 0.19
VIMP08670 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.26■□□□□ 0.19
VIMP08670 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.26■□□□□ 0.19
VIMP08670 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VIMP08670 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 AL596275.1-201ENST00000423464 877 ntBASIC16.26■□□□□ 0.19
VIMP08670 AC092647.4-201ENST00000457211 535 ntBASIC16.26■□□□□ 0.19
VIMP08670 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.26■□□□□ 0.19
VIMP08670 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VIMP08670 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 AC067750.1-201ENST00000608826 6545 ntBASIC16.26■□□□□ 0.19
VIMP08670 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.26■□□□□ 0.19
VIMP08670 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.26■□□□□ 0.19
VIMP08670 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.26■□□□□ 0.19
VIMP08670 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 AC008677.1-201ENST00000519230 1561 ntBASIC16.26■□□□□ 0.19
VIMP08670 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VIMP08670 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.25■□□□□ 0.19
VIMP08670 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.25■□□□□ 0.19
VIMP08670 AC246785.2-201ENST00000432512 513 ntBASIC16.25■□□□□ 0.19
VIMP08670 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.25■□□□□ 0.19
VIMP08670 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.25■□□□□ 0.19
VIMP08670 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.25■□□□□ 0.19
VIMP08670 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.25■□□□□ 0.19
VIMP08670 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 AC090616.6-203ENST00000579186 1945 ntBASIC16.25■□□□□ 0.19
VIMP08670 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
VIMP08670 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
VIMP08670 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
VIMP08670 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VIMP08670 PPP1R26P4-201ENST00000619065 3527 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms