Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL3A1P02461 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL3A1P02461 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC20.93■□□□□ 0.94
COL3A1P02461 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
COL3A1P02461 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL3A1P02461 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC20.93■□□□□ 0.94
COL3A1P02461 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.93■□□□□ 0.94
COL3A1P02461 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC20.93■□□□□ 0.94
COL3A1P02461 VDAC1P7-201ENST00000462417 847 ntBASIC20.93■□□□□ 0.94
COL3A1P02461 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC20.93■□□□□ 0.94
COL3A1P02461 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.93■□□□□ 0.94
COL3A1P02461 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.93■□□□□ 0.94
COL3A1P02461 CR383656.12-201ENST00000549567 513 ntBASIC20.93■□□□□ 0.94
COL3A1P02461 AC120045.2-201ENST00000567334 178 ntBASIC20.93■□□□□ 0.94
COL3A1P02461 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC20.93■□□□□ 0.94
COL3A1P02461 GPX4-206ENST00000588919 803 ntTSL 2 BASIC20.93■□□□□ 0.94
COL3A1P02461 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL3A1P02461 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
COL3A1P02461 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC20.93■□□□□ 0.94
COL3A1P02461 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL3A1P02461 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.93■□□□□ 0.94
COL3A1P02461 PCDHA1-201ENST00000378133 2726 ntBASIC20.93■□□□□ 0.94
COL3A1P02461 AP005117.1-202ENST00000581724 1908 ntBASIC20.93■□□□□ 0.94
COL3A1P02461 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
COL3A1P02461 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
COL3A1P02461 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
COL3A1P02461 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC20.92■□□□□ 0.94
COL3A1P02461 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL3A1P02461 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.92■□□□□ 0.94
COL3A1P02461 AC239800.4-201ENST00000603712 296 ntBASIC20.92■□□□□ 0.94
COL3A1P02461 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 LINC02199-201ENST00000506655 2702 ntBASIC20.92■□□□□ 0.94
COL3A1P02461 MFF-204ENST00000353339 2186 ntTSL 5 BASIC20.92■□□□□ 0.94
COL3A1P02461 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.92■□□□□ 0.94
COL3A1P02461 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL3A1P02461 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC20.92■□□□□ 0.94
COL3A1P02461 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.91■□□□□ 0.94
COL3A1P02461 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC20.91■□□□□ 0.94
COL3A1P02461 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.91■□□□□ 0.94
COL3A1P02461 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 NSL1-201ENST00000366976 722 ntTSL 2 BASIC20.91■□□□□ 0.94
COL3A1P02461 AC098614.1-201ENST00000368528 745 ntBASIC20.91■□□□□ 0.94
COL3A1P02461 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.91■□□□□ 0.94
COL3A1P02461 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.91■□□□□ 0.94
COL3A1P02461 MIR5189-201ENST00000577370 114 ntBASIC20.91■□□□□ 0.94
COL3A1P02461 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.91■□□□□ 0.94
COL3A1P02461 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL3A1P02461 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.91■□□□□ 0.94
COL3A1P02461 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC20.91■□□□□ 0.94
COL3A1P02461 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL3A1P02461 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
COL3A1P02461 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL3A1P02461 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.9■□□□□ 0.94
COL3A1P02461 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms