Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CACNA1FO60840 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.93■□□□□ 0.78
CACNA1FO60840 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC19.93■□□□□ 0.78
CACNA1FO60840 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CACNA1FO60840 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.93■□□□□ 0.78
CACNA1FO60840 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.93■□□□□ 0.78
CACNA1FO60840 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CACNA1FO60840 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CACNA1FO60840 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.92■□□□□ 0.78
CACNA1FO60840 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.92■□□□□ 0.78
CACNA1FO60840 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC19.92■□□□□ 0.78
CACNA1FO60840 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC19.92■□□□□ 0.78
CACNA1FO60840 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.92■□□□□ 0.78
CACNA1FO60840 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 GNRHR2-203ENST00000581100 1187 ntBASIC19.92■□□□□ 0.78
CACNA1FO60840 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.92■□□□□ 0.78
CACNA1FO60840 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC19.92■□□□□ 0.78
CACNA1FO60840 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CACNA1FO60840 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.92■□□□□ 0.78
CACNA1FO60840 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CACNA1FO60840 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.92■□□□□ 0.78
CACNA1FO60840 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
CACNA1FO60840 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CACNA1FO60840 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC19.92■□□□□ 0.78
CACNA1FO60840 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.92■□□□□ 0.78
CACNA1FO60840 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CACNA1FO60840 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.92■□□□□ 0.78
CACNA1FO60840 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CACNA1FO60840 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC19.92■□□□□ 0.78
CACNA1FO60840 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC19.92■□□□□ 0.78
CACNA1FO60840 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC19.92■□□□□ 0.78
CACNA1FO60840 TIMM17BP1-201ENST00000545713 516 ntBASIC19.92■□□□□ 0.78
CACNA1FO60840 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CACNA1FO60840 AC010319.3-201ENST00000597028 470 ntBASIC19.92■□□□□ 0.78
CACNA1FO60840 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC19.91■□□□□ 0.78
CACNA1FO60840 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 AC138969.3-201ENST00000546612 1459 ntBASIC19.91■□□□□ 0.78
CACNA1FO60840 AC138932.2-201ENST00000548268 1459 ntBASIC19.91■□□□□ 0.78
CACNA1FO60840 AC126755.4-201ENST00000549796 1459 ntBASIC19.91■□□□□ 0.78
CACNA1FO60840 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC19.91■□□□□ 0.78
CACNA1FO60840 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
CACNA1FO60840 MFF-204ENST00000353339 2186 ntTSL 5 BASIC19.91■□□□□ 0.78
CACNA1FO60840 RNU1-114P-201ENST00000365297 166 ntBASIC19.91■□□□□ 0.78
CACNA1FO60840 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC19.91■□□□□ 0.78
CACNA1FO60840 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.91■□□□□ 0.78
CACNA1FO60840 AC093813.1-201ENST00000605066 256 ntBASIC19.91■□□□□ 0.78
CACNA1FO60840 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.91■□□□□ 0.78
CACNA1FO60840 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.91■□□□□ 0.78
CACNA1FO60840 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CACNA1FO60840 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CACNA1FO60840 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CACNA1FO60840 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.9■□□□□ 0.78
CACNA1FO60840 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CACNA1FO60840 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CACNA1FO60840 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CACNA1FO60840 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC19.9■□□□□ 0.78
CACNA1FO60840 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC19.9■□□□□ 0.78
CACNA1FO60840 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.9■□□□□ 0.78
CACNA1FO60840 AC087499.6-201ENST00000411576 835 ntBASIC19.9■□□□□ 0.78
CACNA1FO60840 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC19.9■□□□□ 0.78
CACNA1FO60840 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CACNA1FO60840 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CACNA1FO60840 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC19.9■□□□□ 0.78
CACNA1FO60840 CTBP2P3-201ENST00000585629 1255 ntBASIC19.9■□□□□ 0.78
CACNA1FO60840 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.9■□□□□ 0.78
CACNA1FO60840 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.9■□□□□ 0.78
CACNA1FO60840 AC012645.4-201ENST00000610691 1061 ntBASIC19.9■□□□□ 0.78
CACNA1FO60840 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.9■□□□□ 0.78
CACNA1FO60840 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
CACNA1FO60840 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
CACNA1FO60840 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CACNA1FO60840 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms