Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 AL365330.1-201ENST00000607459 531 ntBASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM49D1C9J1S8 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PRSS29P-201ENST00000440800 595 ntBASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM49D1C9J1S8 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 KRT18P34-201ENST00000488218 1270 ntBASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 UNC93B7-201ENST00000509439 705 ntBASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM49D1C9J1S8 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms