Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC20.68■□□□□ 0.9
SMC4Q9NTJ3 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 TSEN15P1-201ENST00000423257 515 ntBASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 AL353705.2-201ENST00000428243 662 ntBASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 AC243562.2-201ENST00000561247 970 ntBASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 AP001059.3-201ENST00000619053 235 ntBASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 LINC00628-201ENST00000628516 1289 ntBASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SMC4Q9NTJ3 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 CCDC74BP1-201ENST00000508880 1123 ntBASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 BNIP3P1-202ENST00000550043 1585 ntBASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMC4Q9NTJ3 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 AP005117.1-202ENST00000581724 1908 ntBASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 CYP4F24P-201ENST00000586049 1580 ntBASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMC4Q9NTJ3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms