Protein–RNA interactions for Protein: Q96DX8

RTP4, Receptor-transporting protein 4, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTP4Q96DX8 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 KRT8P48-201ENST00000515599 1220 ntBASIC16.41■□□□□ 0.22
RTP4Q96DX8 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 AC026120.1-201ENST00000611536 926 ntBASIC16.41■□□□□ 0.22
RTP4Q96DX8 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 AC103702.1-201ENST00000548801 2630 ntBASIC16.41■□□□□ 0.22
RTP4Q96DX8 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 AC090616.6-203ENST00000579186 1945 ntBASIC16.41■□□□□ 0.22
RTP4Q96DX8 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RTP4Q96DX8 AL596257.1-201ENST00000641463 2694 ntBASIC16.41■□□□□ 0.22
RTP4Q96DX8 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.41■□□□□ 0.22
RTP4Q96DX8 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 REXO1L1P-202ENST00000608646 1974 ntBASIC16.4■□□□□ 0.22
RTP4Q96DX8 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 HLA-H-201ENST00000383620 1096 ntBASIC16.4■□□□□ 0.22
RTP4Q96DX8 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 ACTG1P14-201ENST00000446382 1122 ntBASIC16.4■□□□□ 0.22
RTP4Q96DX8 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 AC079140.1-201ENST00000508039 487 ntBASIC16.4■□□□□ 0.22
RTP4Q96DX8 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 MIR4313-201ENST00000580760 101 ntBASIC16.4■□□□□ 0.22
RTP4Q96DX8 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RTP4Q96DX8 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
RTP4Q96DX8 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.39■□□□□ 0.22
RTP4Q96DX8 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
RTP4Q96DX8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 AL136982.4-201ENST00000437689 1740 ntBASIC16.39■□□□□ 0.21
RTP4Q96DX8 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 RNA5SP410-201ENST00000516285 106 ntBASIC16.39■□□□□ 0.21
RTP4Q96DX8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.21
RTP4Q96DX8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RTP4Q96DX8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms