Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 AL589702.1-201ENST00000641229 1509 ntBASIC14.34□□□□□ -0.11
SKA3Q8IX90 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.33□□□□□ -0.11
SKA3Q8IX90 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.33□□□□□ -0.11
SKA3Q8IX90 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SKA3Q8IX90 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SKA3Q8IX90 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
SKA3Q8IX90 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.33□□□□□ -0.11
SKA3Q8IX90 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 AL596087.1-201ENST00000400979 1969 ntBASIC14.33□□□□□ -0.12
SKA3Q8IX90 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 FOXO1B-201ENST00000504678 1527 ntBASIC14.33□□□□□ -0.12
SKA3Q8IX90 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 MIR346-201ENST00000362234 95 ntBASIC14.33□□□□□ -0.12
SKA3Q8IX90 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 AC004461.1-201ENST00000412461 403 ntBASIC14.33□□□□□ -0.12
SKA3Q8IX90 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 AC069335.1-201ENST00000489972 472 ntBASIC14.33□□□□□ -0.12
SKA3Q8IX90 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 KRT8P23-201ENST00000560090 1207 ntBASIC14.33□□□□□ -0.12
SKA3Q8IX90 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 AL513210.1-201ENST00000629608 234 ntBASIC14.33□□□□□ -0.12
SKA3Q8IX90 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.33□□□□□ -0.12
SKA3Q8IX90 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SKA3Q8IX90 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 AL513523.2-202ENST00000427283 2040 ntBASIC14.32□□□□□ -0.12
SKA3Q8IX90 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 UXT-AS1-201ENST00000590504 1525 ntBASIC14.32□□□□□ -0.12
SKA3Q8IX90 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
SKA3Q8IX90 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SKA3Q8IX90 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms