Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 REXO1L1P-202ENST00000608646 1974 ntBASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CCDC60Q8IWA6 GRN-214ENST00000589265 1632 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC60Q8IWA6 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC60Q8IWA6 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC60Q8IWA6 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC60Q8IWA6 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC60Q8IWA6 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCDC60Q8IWA6 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.83■□□□□ 0.45
CCDC60Q8IWA6 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 TPRX2P-201ENST00000535362 881 ntBASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 AC140912.1-201ENST00000577171 1054 ntBASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 CHCHD2P3-201ENST00000603038 451 ntBASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
CCDC60Q8IWA6 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 SLC7A15P-201ENST00000424028 1363 ntBASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 MIR648-201ENST00000385046 94 ntBASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 TARDBPP1-201ENST00000442013 1203 ntBASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 RN7SL692P-201ENST00000464677 288 ntBASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 AL596325.1-201ENST00000563991 1082 ntBASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 WASH4P-201ENST00000564273 1246 ntBASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCDC60Q8IWA6 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AC006449.5-201ENST00000610658 2098 ntBASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AC084018.2-201ENST00000613093 2607 ntBASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AC005034.1-201ENST00000426657 489 ntBASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.81■□□□□ 0.44
CCDC60Q8IWA6 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms