Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 UQCRFS1P1-201ENST00000435169 820 ntBASIC10.01□□□□□ -0.81
LINC00643Q86TS7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 PGM5P2-202ENST00000637225 1043 ntBASIC10.01□□□□□ -0.81
LINC00643Q86TS7 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 AC015818.8-201ENST00000587907 1519 ntBASIC10.01□□□□□ -0.81
LINC00643Q86TS7 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
LINC00643Q86TS7 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 PPME1-201ENST00000328257 2677 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 TRPC6-201ENST00000344327 4612 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC10□□□□□ -0.81
LINC00643Q86TS7 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 ID1-201ENST00000376105 1233 ntBASIC10□□□□□ -0.81
LINC00643Q86TS7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC10□□□□□ -0.81
LINC00643Q86TS7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC10□□□□□ -0.81
LINC00643Q86TS7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC10□□□□□ -0.81
LINC00643Q86TS7 MIR3180-4-201ENST00000582223 153 ntBASIC10□□□□□ -0.81
LINC00643Q86TS7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC10□□□□□ -0.81
LINC00643Q86TS7 AC124016.1-201ENST00000609552 612 ntBASIC10□□□□□ -0.81
LINC00643Q86TS7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 FUT8-AS1-201ENST00000621019 1521 ntBASIC10□□□□□ -0.81
LINC00643Q86TS7 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC10□□□□□ -0.81
LINC00643Q86TS7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 HOXA7-201ENST00000242159 2018 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC10□□□□□ -0.81
LINC00643Q86TS7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
LINC00643Q86TS7 AC132938.5-201ENST00000624980 1813 ntBASIC10□□□□□ -0.81
LINC00643Q86TS7 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC10□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms