Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.89■□□□□ 0.13
PKNOX1P55347 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
PKNOX1P55347 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
PKNOX1P55347 AC092919.2-201ENST00000623631 1645 ntBASIC15.89■□□□□ 0.13
PKNOX1P55347 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.89■□□□□ 0.13
PKNOX1P55347 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.89■□□□□ 0.13
PKNOX1P55347 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
PKNOX1P55347 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 AC068587.6-202ENST00000641839 5619 ntBASIC15.88■□□□□ 0.13
PKNOX1P55347 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 IGLL3P-201ENST00000412472 434 ntBASIC15.88■□□□□ 0.13
PKNOX1P55347 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 AC009947.1-201ENST00000444350 727 ntBASIC15.88■□□□□ 0.13
PKNOX1P55347 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.88■□□□□ 0.13
PKNOX1P55347 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.88■□□□□ 0.13
PKNOX1P55347 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 AC067930.6-201ENST00000623257 4947 ntBASIC15.88■□□□□ 0.13
PKNOX1P55347 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.88■□□□□ 0.13
PKNOX1P55347 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
PKNOX1P55347 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.88■□□□□ 0.13
PKNOX1P55347 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
PKNOX1P55347 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
PKNOX1P55347 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
PKNOX1P55347 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 AC006058.4-201ENST00000624016 1670 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.87■□□□□ 0.13
PKNOX1P55347 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.87■□□□□ 0.13
PKNOX1P55347 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 AC093724.1-201ENST00000448659 1027 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 HCG4B-203ENST00000450128 991 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 AC093909.1-201ENST00000504731 1122 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.87■□□□□ 0.13
PKNOX1P55347 UNC93B6-202ENST00000528242 690 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 AP002469.2-201ENST00000531724 424 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
PKNOX1P55347 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.87■□□□□ 0.13
PKNOX1P55347 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.87■□□□□ 0.13
PKNOX1P55347 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.87■□□□□ 0.13
PKNOX1P55347 AC096734.2-201ENST00000562054 433 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
PKNOX1P55347 AL049840.3-201ENST00000602669 611 ntBASIC15.87■□□□□ 0.13
PKNOX1P55347 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
PKNOX1P55347 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms