Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
CDH12P55289 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.09■□□□□ 0.01
CDH12P55289 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 MRPL3P1-201ENST00000400109 1033 ntBASIC15.09■□□□□ 0.01
CDH12P55289 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.09■□□□□ 0.01
CDH12P55289 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.09■□□□□ 0.01
CDH12P55289 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.09■□□□□ 0.01
CDH12P55289 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.09■□□□□ 0.01
CDH12P55289 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
CDH12P55289 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.09■□□□□ 0.01
CDH12P55289 AC116407.3-201ENST00000623905 1129 ntBASIC15.09■□□□□ 0.01
CDH12P55289 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CDH12P55289 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
CDH12P55289 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.09■□□□□ 0.01
CDH12P55289 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.09■□□□□ 0.01
CDH12P55289 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CDH12P55289 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CDH12P55289 TNRC18P2-201ENST00000417666 2714 ntBASIC15.08■□□□□ 0.01
CDH12P55289 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.08■□□□□ 0.01
CDH12P55289 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.08■□□□□ 0.01
CDH12P55289 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.08■□□□□ 0.01
CDH12P55289 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDH12P55289 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDH12P55289 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDH12P55289 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.08■□□□□ 0.01
CDH12P55289 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDH12P55289 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
CDH12P55289 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CDH12P55289 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 SSR4P1-203ENST00000599569 2260 ntBASIC15.08■□□□□ 0
CDH12P55289 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 AC136621.1-201ENST00000624017 2304 ntBASIC15.08■□□□□ 0
CDH12P55289 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.08■□□□□ 0
CDH12P55289 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.08■□□□□ 0
CDH12P55289 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0
CDH12P55289 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.08■□□□□ 0
CDH12P55289 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 RNU1-129P-201ENST00000384064 167 ntBASIC15.08■□□□□ 0
CDH12P55289 AL513480.1-201ENST00000451731 511 ntBASIC15.08■□□□□ 0
CDH12P55289 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC15.08■□□□□ 0
CDH12P55289 UNC93B6-202ENST00000528242 690 ntBASIC15.08■□□□□ 0
CDH12P55289 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.08■□□□□ 0
CDH12P55289 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 U1.21-201ENST00000580816 167 ntBASIC15.08■□□□□ 0
CDH12P55289 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
CDH12P55289 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CDH12P55289 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.08■□□□□ 0
CDH12P55289 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.08■□□□□ 0
CDH12P55289 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.08■□□□□ 0
CDH12P55289 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.08■□□□□ 0
CDH12P55289 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 MIR600HG-201ENST00000449175 5984 ntBASIC15.08■□□□□ 0
CDH12P55289 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
CDH12P55289 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CDH12P55289 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.08■□□□□ 0
CDH12P55289 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
CDH12P55289 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
CDH12P55289 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.07■□□□□ 0
CDH12P55289 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.07■□□□□ 0
CDH12P55289 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CDH12P55289 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CDH12P55289 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CDH12P55289 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms