Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGCS2P54868 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGCS2P54868 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.46■□□□□ 0.55
HMGCS2P54868 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGCS2P54868 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
HMGCS2P54868 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
HMGCS2P54868 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
HMGCS2P54868 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.46■□□□□ 0.54
HMGCS2P54868 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 ALOX12P2-203ENST00000570921 1945 ntBASIC18.45■□□□□ 0.54
HMGCS2P54868 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 ACTBP11-201ENST00000436287 1126 ntBASIC18.45■□□□□ 0.54
HMGCS2P54868 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.45■□□□□ 0.54
HMGCS2P54868 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 AC068587.3-201ENST00000526613 355 ntBASIC18.45■□□□□ 0.54
HMGCS2P54868 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGCS2P54868 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGCS2P54868 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGCS2P54868 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGCS2P54868 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGCS2P54868 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
HMGCS2P54868 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGCS2P54868 SOCS2P1-201ENST00000417727 557 ntBASIC18.44■□□□□ 0.54
HMGCS2P54868 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.44■□□□□ 0.54
HMGCS2P54868 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.44■□□□□ 0.54
HMGCS2P54868 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.44■□□□□ 0.54
HMGCS2P54868 SLED1-202ENST00000512051 380 ntBASIC18.44■□□□□ 0.54
HMGCS2P54868 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 AP001889.1-201ENST00000525414 633 ntBASIC18.44■□□□□ 0.54
HMGCS2P54868 ENPP7P5-201ENST00000541031 1031 ntBASIC18.44■□□□□ 0.54
HMGCS2P54868 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 PTP4A1P2-201ENST00000546033 454 ntBASIC18.44■□□□□ 0.54
HMGCS2P54868 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGCS2P54868 AL049840.4-201ENST00000602422 811 ntBASIC18.44■□□□□ 0.54
HMGCS2P54868 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGCS2P54868 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGCS2P54868 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.44■□□□□ 0.54
HMGCS2P54868 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGCS2P54868 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms