Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 AL162726.2-201ENST00000438986 1017 ntBASIC15.89■□□□□ 0.13
LIMK1P53667 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.89■□□□□ 0.13
LIMK1P53667 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.89■□□□□ 0.13
LIMK1P53667 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.89■□□□□ 0.13
LIMK1P53667 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.89■□□□□ 0.13
LIMK1P53667 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 AC074044.1-201ENST00000609673 707 ntBASIC15.89■□□□□ 0.13
LIMK1P53667 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LIMK1P53667 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 AC116353.5-201ENST00000638148 1699 ntBASIC15.89■□□□□ 0.13
LIMK1P53667 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LIMK1P53667 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LIMK1P53667 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LIMK1P53667 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
LIMK1P53667 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC15.88■□□□□ 0.13
LIMK1P53667 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
LIMK1P53667 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 ACTG1P3-201ENST00000431775 1114 ntBASIC15.88■□□□□ 0.13
LIMK1P53667 RPL7P3-201ENST00000441388 714 ntBASIC15.88■□□□□ 0.13
LIMK1P53667 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 TIMM17BP1-201ENST00000545713 516 ntBASIC15.88■□□□□ 0.13
LIMK1P53667 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.88■□□□□ 0.13
LIMK1P53667 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.88■□□□□ 0.13
LIMK1P53667 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.88■□□□□ 0.13
LIMK1P53667 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LIMK1P53667 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.88■□□□□ 0.13
LIMK1P53667 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.88■□□□□ 0.13
LIMK1P53667 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
LIMK1P53667 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.88■□□□□ 0.13
LIMK1P53667 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LIMK1P53667 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
LIMK1P53667 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.87■□□□□ 0.13
LIMK1P53667 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
LIMK1P53667 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
LIMK1P53667 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.87■□□□□ 0.13
LIMK1P53667 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 AC006449.5-201ENST00000610658 2098 ntBASIC15.87■□□□□ 0.13
LIMK1P53667 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.87■□□□□ 0.13
LIMK1P53667 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.87■□□□□ 0.13
LIMK1P53667 KRT8P13-201ENST00000463294 1010 ntBASIC15.87■□□□□ 0.13
LIMK1P53667 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.87■□□□□ 0.13
LIMK1P53667 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
LIMK1P53667 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LIMK1P53667 AC243960.2-201ENST00000600996 747 ntBASIC15.87■□□□□ 0.13
LIMK1P53667 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.87■□□□□ 0.13
LIMK1P53667 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.87■□□□□ 0.13
LIMK1P53667 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms