Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
NEK3P51956 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
NEK3P51956 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.67■□□□□ 0.26
NEK3P51956 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.67■□□□□ 0.26
NEK3P51956 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 AP000842.3-202ENST00000569238 1080 ntBASIC16.67■□□□□ 0.26
NEK3P51956 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.67■□□□□ 0.26
NEK3P51956 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.67■□□□□ 0.26
NEK3P51956 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
NEK3P51956 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
NEK3P51956 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.67■□□□□ 0.26
NEK3P51956 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
NEK3P51956 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEK3P51956 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NEK3P51956 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NEK3P51956 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.66■□□□□ 0.26
NEK3P51956 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
NEK3P51956 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 GPS2P2-201ENST00000430745 888 ntBASIC16.66■□□□□ 0.26
NEK3P51956 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.66■□□□□ 0.26
NEK3P51956 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.66■□□□□ 0.26
NEK3P51956 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 FAM86GP-201ENST00000448322 971 ntBASIC16.66■□□□□ 0.26
NEK3P51956 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.66■□□□□ 0.26
NEK3P51956 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 SLC25A39P2-201ENST00000537614 270 ntBASIC16.66■□□□□ 0.26
NEK3P51956 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.66■□□□□ 0.26
NEK3P51956 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.66■□□□□ 0.26
NEK3P51956 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
NEK3P51956 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.66■□□□□ 0.26
NEK3P51956 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
NEK3P51956 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.66■□□□□ 0.26
NEK3P51956 AP001059.3-201ENST00000619053 235 ntBASIC16.66■□□□□ 0.26
NEK3P51956 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEK3P51956 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.66■□□□□ 0.26
NEK3P51956 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms