Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MRE11P49959 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.91■□□□□ 0.62
MRE11P49959 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
MRE11P49959 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
MRE11P49959 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
MRE11P49959 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.9■□□□□ 0.62
MRE11P49959 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.9■□□□□ 0.62
MRE11P49959 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.9■□□□□ 0.62
MRE11P49959 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.9■□□□□ 0.62
MRE11P49959 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.9■□□□□ 0.62
MRE11P49959 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.9■□□□□ 0.62
MRE11P49959 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.9■□□□□ 0.62
MRE11P49959 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.9■□□□□ 0.62
MRE11P49959 MIR7706-201ENST00000613747 67 ntBASIC18.9■□□□□ 0.62
MRE11P49959 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.9■□□□□ 0.62
MRE11P49959 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
MRE11P49959 LINC00552-201ENST00000625151 2579 ntBASIC18.9■□□□□ 0.62
MRE11P49959 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
MRE11P49959 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.9■□□□□ 0.62
MRE11P49959 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MRE11P49959 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MRE11P49959 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MRE11P49959 AC092919.2-201ENST00000623631 1645 ntBASIC18.89■□□□□ 0.62
MRE11P49959 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.62
MRE11P49959 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.89■□□□□ 0.61
MRE11P49959 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.89■□□□□ 0.61
MRE11P49959 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.89■□□□□ 0.61
MRE11P49959 POU5F1P6-201ENST00000466990 990 ntBASIC18.89■□□□□ 0.61
MRE11P49959 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
MRE11P49959 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
MRE11P49959 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.89■□□□□ 0.61
MRE11P49959 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.89■□□□□ 0.61
MRE11P49959 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.89■□□□□ 0.61
MRE11P49959 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.89■□□□□ 0.61
MRE11P49959 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
MRE11P49959 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
MRE11P49959 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.89■□□□□ 0.61
MRE11P49959 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MRE11P49959 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC18.88■□□□□ 0.61
MRE11P49959 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 AL390755.1-201ENST00000623716 2027 ntBASIC18.88■□□□□ 0.61
MRE11P49959 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 MIR648-201ENST00000385046 94 ntBASIC18.88■□□□□ 0.61
MRE11P49959 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
MRE11P49959 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.88■□□□□ 0.61
MRE11P49959 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.88■□□□□ 0.61
MRE11P49959 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.88■□□□□ 0.61
MRE11P49959 Z69720.1-201ENST00000601483 472 ntBASIC18.88■□□□□ 0.61
MRE11P49959 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 AC233702.3-201ENST00000578656 1387 ntBASIC18.88■□□□□ 0.61
MRE11P49959 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
MRE11P49959 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 AC009336.1-201ENST00000608941 1553 ntBASIC18.88■□□□□ 0.61
MRE11P49959 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
MRE11P49959 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.88■□□□□ 0.61
MRE11P49959 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MRE11P49959 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.88■□□□□ 0.61
MRE11P49959 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms