Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.95■□□□□ 0.3
PDGFRAP16234 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PDGFRAP16234 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PDGFRAP16234 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.94■□□□□ 0.3
PDGFRAP16234 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
PDGFRAP16234 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
PDGFRAP16234 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.94■□□□□ 0.3
PDGFRAP16234 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.94■□□□□ 0.3
PDGFRAP16234 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.94■□□□□ 0.3
PDGFRAP16234 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.94■□□□□ 0.3
PDGFRAP16234 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.94■□□□□ 0.3
PDGFRAP16234 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.94■□□□□ 0.3
PDGFRAP16234 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.94■□□□□ 0.3
PDGFRAP16234 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.94■□□□□ 0.3
PDGFRAP16234 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 PAUPAR-201ENST00000630360 2965 ntBASIC16.94■□□□□ 0.3
PDGFRAP16234 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PDGFRAP16234 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PDGFRAP16234 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.94■□□□□ 0.3
PDGFRAP16234 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.93■□□□□ 0.3
PDGFRAP16234 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PDGFRAP16234 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.93■□□□□ 0.3
PDGFRAP16234 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.93■□□□□ 0.3
PDGFRAP16234 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 HLA-J-203ENST00000494367 1087 ntBASIC16.93■□□□□ 0.3
PDGFRAP16234 RARRES2P9-201ENST00000565168 469 ntBASIC16.93■□□□□ 0.3
PDGFRAP16234 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.93■□□□□ 0.3
PDGFRAP16234 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.93■□□□□ 0.3
PDGFRAP16234 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.93■□□□□ 0.3
PDGFRAP16234 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.93■□□□□ 0.3
PDGFRAP16234 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.93■□□□□ 0.3
PDGFRAP16234 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PDGFRAP16234 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PDGFRAP16234 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.92■□□□□ 0.3
PDGFRAP16234 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.92■□□□□ 0.3
PDGFRAP16234 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.92■□□□□ 0.3
PDGFRAP16234 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PDGFRAP16234 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.92■□□□□ 0.3
PDGFRAP16234 AP003680.1-201ENST00000598970 3660 ntBASIC16.92■□□□□ 0.3
PDGFRAP16234 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.92■□□□□ 0.3
PDGFRAP16234 RBPMS2P1-201ENST00000437762 623 ntBASIC16.92■□□□□ 0.3
PDGFRAP16234 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.92■□□□□ 0.3
PDGFRAP16234 ALG1L8P-201ENST00000533887 760 ntBASIC16.92■□□□□ 0.3
PDGFRAP16234 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.92■□□□□ 0.3
PDGFRAP16234 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.92■□□□□ 0.3
PDGFRAP16234 AC027796.2-201ENST00000575326 344 ntBASIC16.92■□□□□ 0.3
PDGFRAP16234 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.92■□□□□ 0.3
PDGFRAP16234 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PDGFRAP16234 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms