Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC19.18■□□□□ 0.66
MBD4O95243 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.18■□□□□ 0.66
MBD4O95243 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD4O95243 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.18■□□□□ 0.66
MBD4O95243 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC19.18■□□□□ 0.66
MBD4O95243 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
MBD4O95243 AC138761.1-201ENST00000584393 385 ntBASIC19.18■□□□□ 0.66
MBD4O95243 AC025048.3-201ENST00000590609 569 ntBASIC19.18■□□□□ 0.66
MBD4O95243 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.18■□□□□ 0.66
MBD4O95243 TEX48-202ENST00000612244 662 ntTSL 3 BASIC19.18■□□□□ 0.66
MBD4O95243 AC005702.4-201ENST00000618393 416 ntBASIC19.18■□□□□ 0.66
MBD4O95243 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD4O95243 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
MBD4O95243 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC19.18■□□□□ 0.66
MBD4O95243 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MBD4O95243 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD4O95243 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
MBD4O95243 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.17■□□□□ 0.66
MBD4O95243 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
MBD4O95243 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.17■□□□□ 0.66
MBD4O95243 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
MBD4O95243 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
MBD4O95243 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 TERF1P3-201ENST00000505638 1227 ntBASIC19.17■□□□□ 0.66
MBD4O95243 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.17■□□□□ 0.66
MBD4O95243 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC19.17■□□□□ 0.66
MBD4O95243 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.17■□□□□ 0.66
MBD4O95243 AC104794.3-201ENST00000566840 1248 ntBASIC19.17■□□□□ 0.66
MBD4O95243 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.17■□□□□ 0.66
MBD4O95243 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MBD4O95243 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.17■□□□□ 0.66
MBD4O95243 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.16■□□□□ 0.66
MBD4O95243 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
MBD4O95243 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
MBD4O95243 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.16■□□□□ 0.66
MBD4O95243 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
MBD4O95243 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
MBD4O95243 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MBD4O95243 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MBD4O95243 REXO1L1P-202ENST00000608646 1974 ntBASIC19.16■□□□□ 0.66
MBD4O95243 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC19.16■□□□□ 0.66
MBD4O95243 SPTLC1P1-201ENST00000447199 261 ntBASIC19.16■□□□□ 0.66
MBD4O95243 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC19.16■□□□□ 0.66
MBD4O95243 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC19.16■□□□□ 0.66
MBD4O95243 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC19.16■□□□□ 0.66
MBD4O95243 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC19.16■□□□□ 0.66
MBD4O95243 RNA5-8SN1-201ENST00000610460 153 ntBASIC19.16■□□□□ 0.66
MBD4O95243 RNA5-8SN5-202ENST00000612463 153 ntBASIC19.16■□□□□ 0.66
MBD4O95243 AC009118.2-201ENST00000613275 655 ntBASIC19.16■□□□□ 0.66
MBD4O95243 RNA5-8SN4-201ENST00000613359 153 ntBASIC19.16■□□□□ 0.66
MBD4O95243 RNA5-8SN5-201ENST00000619471 153 ntBASIC19.16■□□□□ 0.66
MBD4O95243 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
MBD4O95243 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC19.16■□□□□ 0.66
MBD4O95243 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 LINC02199-201ENST00000506655 2702 ntBASIC19.16■□□□□ 0.66
MBD4O95243 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
MBD4O95243 BTBD7P1-201ENST00000447253 1453 ntBASIC19.16■□□□□ 0.66
MBD4O95243 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MBD4O95243 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MBD4O95243 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MBD4O95243 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC19.15■□□□□ 0.66
MBD4O95243 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MBD4O95243 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.15■□□□□ 0.66
MBD4O95243 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
MBD4O95243 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MBD4O95243 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.15■□□□□ 0.66
MBD4O95243 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MBD4O95243 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
MBD4O95243 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MBD4O95243 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MBD4O95243 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms