Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
LMX1BO60663 AL139400.1-201ENST00000366220 510 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 CD99-202ENST00000381180 530 ntTSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 RNU1-129P-201ENST00000384064 167 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 AC092474.2-201ENST00000424288 719 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 CXCL1P1-201ENST00000502804 216 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.23□□□□□ -0.13
LMX1BO60663 U1.21-201ENST00000580816 167 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.23□□□□□ -0.13
LMX1BO60663 MIR4515-201ENST00000584082 81 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 AC068137.2-201ENST00000605408 478 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 AL513210.1-201ENST00000629608 234 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.23□□□□□ -0.13
LMX1BO60663 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 AC104640.1-201ENST00000562617 2109 ntBASIC14.23□□□□□ -0.13
LMX1BO60663 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
LMX1BO60663 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LMX1BO60663 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 AC126177.1-201ENST00000547829 2218 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 AC013268.4-201ENST00000637413 2228 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
LMX1BO60663 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
LMX1BO60663 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
LMX1BO60663 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 AC004461.1-201ENST00000412461 403 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.22□□□□□ -0.13
LMX1BO60663 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.22□□□□□ -0.13
LMX1BO60663 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 COX20P2-201ENST00000452636 358 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.22□□□□□ -0.13
LMX1BO60663 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 AC239800.4-201ENST00000603712 296 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 AL031055.1-201ENST00000606362 631 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 AC105339.1-204ENST00000636249 355 ntBASIC14.22□□□□□ -0.13
LMX1BO60663 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.22□□□□□ -0.13
LMX1BO60663 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.22□□□□□ -0.13
LMX1BO60663 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LMX1BO60663 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LMX1BO60663 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LMX1BO60663 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms