Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC18.03■□□□□ 0.48
MSH4O15457 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.03■□□□□ 0.48
MSH4O15457 AC025048.3-201ENST00000590609 569 ntBASIC18.03■□□□□ 0.48
MSH4O15457 AC092364.2-202ENST00000597012 1073 ntBASIC18.03■□□□□ 0.48
MSH4O15457 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.03■□□□□ 0.48
MSH4O15457 AC005702.4-201ENST00000618393 416 ntBASIC18.03■□□□□ 0.48
MSH4O15457 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 AC010491.1-201ENST00000563101 2797 ntBASIC18.03■□□□□ 0.48
MSH4O15457 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.03■□□□□ 0.48
MSH4O15457 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MSH4O15457 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH4O15457 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
MSH4O15457 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 AC236430.1-201ENST00000402231 743 ntBASIC18.02■□□□□ 0.48
MSH4O15457 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.02■□□□□ 0.48
MSH4O15457 PHKG1P2-201ENST00000457537 863 ntBASIC18.02■□□□□ 0.48
MSH4O15457 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH4O15457 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.02■□□□□ 0.48
MSH4O15457 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.02■□□□□ 0.48
MSH4O15457 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC18.02■□□□□ 0.48
MSH4O15457 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
MSH4O15457 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.02■□□□□ 0.48
MSH4O15457 AL109936.8-201ENST00000641772 604 ntBASIC18.02■□□□□ 0.48
MSH4O15457 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MSH4O15457 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
MSH4O15457 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.02■□□□□ 0.47
MSH4O15457 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.02■□□□□ 0.47
MSH4O15457 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.02■□□□□ 0.47
MSH4O15457 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSH4O15457 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSH4O15457 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSH4O15457 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSH4O15457 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
MSH4O15457 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
MSH4O15457 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
MSH4O15457 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.02■□□□□ 0.47
MSH4O15457 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC18.02■□□□□ 0.47
MSH4O15457 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
MSH4O15457 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.01■□□□□ 0.47
MSH4O15457 AC002472.2-201ENST00000442739 958 ntBASIC18.01■□□□□ 0.47
MSH4O15457 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.01■□□□□ 0.47
MSH4O15457 SERBP1P5-201ENST00000510079 1181 ntBASIC18.01■□□□□ 0.47
MSH4O15457 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC18.01■□□□□ 0.47
MSH4O15457 SDHAP3-202ENST00000515467 728 ntBASIC18.01■□□□□ 0.47
MSH4O15457 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.01■□□□□ 0.47
MSH4O15457 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC18.01■□□□□ 0.47
MSH4O15457 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.01■□□□□ 0.47
MSH4O15457 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
MSH4O15457 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.01■□□□□ 0.47
MSH4O15457 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MSH4O15457 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms