Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.31■□□□□ 0.04
UPK1AO00322 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.31■□□□□ 0.04
UPK1AO00322 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
UPK1AO00322 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.3■□□□□ 0.04
UPK1AO00322 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 RARRES2P8-201ENST00000566335 367 ntBASIC15.3■□□□□ 0.04
UPK1AO00322 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.3■□□□□ 0.04
UPK1AO00322 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
UPK1AO00322 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
UPK1AO00322 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 AC092902.6-201ENST00000641783 218 ntBASIC15.3■□□□□ 0.04
UPK1AO00322 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.3■□□□□ 0.04
UPK1AO00322 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.3■□□□□ 0.04
UPK1AO00322 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
UPK1AO00322 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.29■□□□□ 0.04
UPK1AO00322 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.29■□□□□ 0.04
UPK1AO00322 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.29■□□□□ 0.04
UPK1AO00322 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
UPK1AO00322 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
UPK1AO00322 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
UPK1AO00322 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.29■□□□□ 0.04
UPK1AO00322 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 PMS2P7-201ENST00000506558 1336 ntBASIC15.29■□□□□ 0.04
UPK1AO00322 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
UPK1AO00322 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.29■□□□□ 0.04
UPK1AO00322 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 AC004832.2-201ENST00000426397 482 ntBASIC15.29■□□□□ 0.04
UPK1AO00322 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.29■□□□□ 0.04
UPK1AO00322 FAM58CP-201ENST00000435741 640 ntBASIC15.29■□□□□ 0.04
UPK1AO00322 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.29■□□□□ 0.04
UPK1AO00322 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
UPK1AO00322 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.29■□□□□ 0.04
UPK1AO00322 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
UPK1AO00322 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms