Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC39Q9UFE4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC39Q9UFE4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC39Q9UFE4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC39Q9UFE4 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.77■□□□□ 0.59
CCDC39Q9UFE4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC39Q9UFE4 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 AL513480.1-201ENST00000451731 511 ntBASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 Z83851.2-201ENST00000609564 659 ntBASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 AL645728.2-201ENST00000641974 660 ntBASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC39Q9UFE4 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC39Q9UFE4 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 GPAA1P2-202ENST00000606848 1787 ntBASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 HCG4B-203ENST00000450128 991 ntBASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 AC079776.4-201ENST00000511039 504 ntBASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 AL031432.2-201ENST00000566714 459 ntBASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 AL928711.1-201ENST00000570165 459 ntBASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms