Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 PTCHD3P3-201ENST00000403073 906 ntBASIC14□□□□□ -0.17
CHMP1AQ9HD42 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 KRT18P35-201ENST00000510488 1269 ntBASIC14□□□□□ -0.17
CHMP1AQ9HD42 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 AC008608.2-201ENST00000606089 416 ntBASIC14□□□□□ -0.17
CHMP1AQ9HD42 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14□□□□□ -0.17
CHMP1AQ9HD42 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14□□□□□ -0.17
CHMP1AQ9HD42 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 TPM1-218ENST00000559281 851 ntTSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 LINC01711-201ENST00000598340 967 ntBASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 AC004706.3-202ENST00000621574 984 ntBASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 FAM45BP-202ENST00000592932 1624 ntBASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 AC013268.4-201ENST00000637413 2228 ntBASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 SNX33P1-201ENST00000592116 1762 ntBASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CHMP1AQ9HD42 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.98□□□□□ -0.17
CHMP1AQ9HD42 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms