Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 AC140878.1-201ENST00000565277 250 ntBASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 AC107890.1-201ENST00000422478 521 ntBASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 AC125807.1-201ENST00000483097 614 ntBASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 AC093512.1-201ENST00000617969 520 ntBASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM39Q9HCM9 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 AL662844.4-201ENST00000606367 2838 ntBASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 AC105021.1-202ENST00000570572 669 ntBASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
TRIM39Q9HCM9 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms