Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.7■□□□□ 0.26
PCDH9Q9HC56 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 AC013268.4-201ENST00000637413 2228 ntBASIC16.69■□□□□ 0.26
PCDH9Q9HC56 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 RARRES2P8-201ENST00000566335 367 ntBASIC16.69■□□□□ 0.26
PCDH9Q9HC56 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.69■□□□□ 0.26
PCDH9Q9HC56 AC005829.1-201ENST00000570002 483 ntBASIC16.69■□□□□ 0.26
PCDH9Q9HC56 MIR3687-2-201ENST00000577708 61 ntBASIC16.69■□□□□ 0.26
PCDH9Q9HC56 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 MIR3687-1-201ENST00000614492 61 ntBASIC16.69■□□□□ 0.26
PCDH9Q9HC56 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PCDH9Q9HC56 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 AL355306.1-201ENST00000415580 579 ntBASIC16.68■□□□□ 0.26
PCDH9Q9HC56 GPX1P2-201ENST00000429271 606 ntBASIC16.68■□□□□ 0.26
PCDH9Q9HC56 AL671277.1-201ENST00000429656 993 ntBASIC16.68■□□□□ 0.26
PCDH9Q9HC56 ACTG1P14-201ENST00000446382 1122 ntBASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PPT1-215ENST00000641471 2368 ntBASIC16.68■□□□□ 0.26
PCDH9Q9HC56 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 AC011477.6-201ENST00000604980 1927 ntBASIC16.68■□□□□ 0.26
PCDH9Q9HC56 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.68■□□□□ 0.26
PCDH9Q9HC56 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.67■□□□□ 0.26
PCDH9Q9HC56 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms