Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 FO393414.2-201ENST00000405153 598 ntBASIC18.99■□□□□ 0.63
RNF41Q9H4P4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 BASP1P1-201ENST00000430708 665 ntBASIC18.99■□□□□ 0.63
RNF41Q9H4P4 AC241585.1-201ENST00000433527 519 ntBASIC18.99■□□□□ 0.63
RNF41Q9H4P4 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 AC005498.2-205ENST00000593218 784 ntBASIC18.99■□□□□ 0.63
RNF41Q9H4P4 AL390955.2-201ENST00000603032 514 ntBASIC18.99■□□□□ 0.63
RNF41Q9H4P4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 AC100757.3-201ENST00000622361 1406 ntBASIC18.99■□□□□ 0.63
RNF41Q9H4P4 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RNF41Q9H4P4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 CDC14C-201ENST00000428251 1719 ntBASIC18.98■□□□□ 0.63
RNF41Q9H4P4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 MIR770-201ENST00000390219 98 ntBASIC18.98■□□□□ 0.63
RNF41Q9H4P4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 AL390754.1-201ENST00000619088 582 ntBASIC18.98■□□□□ 0.63
RNF41Q9H4P4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RNF41Q9H4P4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 AC093214.1-201ENST00000511688 1107 ntBASIC18.97■□□□□ 0.63
RNF41Q9H4P4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 MIR6069-201ENST00000620069 79 ntBASIC18.97■□□□□ 0.63
RNF41Q9H4P4 AL590560.3-201ENST00000623350 461 ntBASIC18.97■□□□□ 0.63
RNF41Q9H4P4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RNF41Q9H4P4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms