Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 MIR3687-1-201ENST00000614492 61 ntBASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 AC055717.3-201ENST00000622967 595 ntBASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 CICP13-201ENST00000422015 2789 ntBASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.3■□□□□ 0.68
UPF3BQ9BZI7 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 HAUS4P1-201ENST00000406739 1145 ntBASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 RNA5SP416-201ENST00000516838 111 ntBASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
UPF3BQ9BZI7 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 AC013268.4-201ENST00000637413 2228 ntBASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 AC027601.4-201ENST00000611259 610 ntBASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
UPF3BQ9BZI7 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC19.27■□□□□ 0.68
UPF3BQ9BZI7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
UPF3BQ9BZI7 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
UPF3BQ9BZI7 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
UPF3BQ9BZI7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms